Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03765 ATGACGACACCACCTTCTTCATCATCTTCTCAATCGCAATTTGTGTATTCCAACGCTCCTTACTTCCCCGTTCCCTTTCATCTTCAACAACCCGCAACCACCACTCACTACGCCGCACCGTACGTTGCCACCCCTGCCGTTCAACTTCCTCCGCCACCAGTCGTCGGTCCCGTTCCACCTCCGGCTGCTTACTCGGTGCCGCAATATCAGGCACAACAGTTATTTGAGAGGGATGCACAGATAATTACGCCGGAGGCTCTTGAGAATGTGAAGGCTGCGATTGCGAGTAGCGACGTTGAGCATAAAGCTGAGACGAAAAAGAAAGCGGTTCCTCGTAAAGCTGCTGGTCAATCTTGGGAGGATCCTATACTTGCAGAGTGGCCTGAAGATGATTATCGTCTCTTCTGCGGTGATCTTGGTAATGAAGTCAATGACGATGTTCTTTCAAAAGCATTCACAAGATTCCCTTCCTTTAACATGGCACGAGTTGTTAGAGATAAGCGAACTGGAAAAACAAAGGGTTATGGATTTATAAGCTTTGCCAACCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAGCTACGCAAGAGTAAGTGGAGGGAGAGAACTGATTTTGATGCACTGGAGAAACAGAAGAACCATATTCAGAAGAAACCGAAAATGTCAAGGAAGGGTATTCTGCACAAGTGA 723 0.4675 MTTPPSSSSSQSQFVYSNAPYFPVPFHLQQPATTTHYAAPYVATPAVQLPPPPVVGPVPPPAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDFDALEKQKNHIQKKPKMSRKGILHK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03765 240 FunFam RNA-binding protein 42 67 217 - -
Trre1g03765 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Trre1g03765 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 218 - -
Trre1g03765 240 CDD RRM_RBM42 126 208 IPR034215 -
Trre1g03765 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Trre1g03765 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Trre1g03765 240 SUPERFAMILY RNA-binding domain, RBD 115 212 IPR035979 GO:0003676
Trre1g03765 240 Gene3D - 72 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03765 Trre-Chr1 36432121 36436993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03765 81 212 Eukaryotic Initiation Factors Gene Family AT1G71770 24.088 1.04e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03765 K25079 - gmx:100791946 377.096