Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03762 ATGTGCGAAACCCTAAAAACCAAGTACCAACTCACCGAAGAAATCGGTCGCGGCCGTTTCGGCACCATATTCCGGTGCTTCCACCCTAACTCCGCCGTACCTTACGCCTGCAAAGTCATCGACAAATCTCTCCTCTCTGATTCCACCGATCGTGAGTGTCTTCAAAACGAACCTAAGTTTCTTTCTCTTCTTTCACCTCACCCTAACGTTCTTCAAATCTTGGACGTTTTCGAAAACGACGATTTCTTATCAATTGTTTTAGAGCTTTGTCAACCTCTCACTCTTCTTGATCGTATCGTTTCAAATCCTTTCTCTGAACAACAAGCTTCTTCTCTCATCAAGAAGCTTCTCGAAGCCGTTGTTCACTGCCACCGTCTCGGTGTCGCTCACCGTGATATTAAGCCTGATAACATTCTCTTCGATTCTGATGATAATCTCAAATTAGCAGATTTCGGTTCGGCTGAATGGTTCGGCGACGGAAGAACAATGAACGGCGTCGTTGGAACACCGTATTATGTTGCGCCGGAAGTTCTTTTAGGAAGAGATTATACAGAGAAAGTTGATGTGTGGAGCTGTGGTGTGATACTGTACATAATGTTGAGCGGGATTCCGCCTTTTTACGGAGATTCTGCGGCTGAGATTTTTGAGGCGGTTATTAGAGGGAATCTGAGGTTTCCTTCTAGAATCTTCCGTTCTGTTTCTTCTGGTGCTAAGGATCTGTTGAGAAAAATGATTTGTAGAGATGATTCAAGAAGATTTTCAGCAGAACAAGCCTTGAGACACCCTTGGATAGTGAGTGGAGGTGAAACAACAAATCAGAATTGA 825 0.4412 MCETLKTKYQLTEEIGRGRFGTIFRCFHPNSAVPYACKVIDKSLLSDSTDRECLQNEPKFLSLLSPHPNVLQILDVFENDDFLSIVLELCQPLTLLDRIVSNPFSEQQASSLIKKLLEAVVHCHRLGVAHRDIKPDNILFDSDDNLKLADFGSAEWFGDGRTMNGVVGTPYYVAPEVLLGRDYTEKVDVWSCGVILYIMLSGIPPFYGDSAAEIFEAVIRGNLRFPSRIFRSVSSGAKDLLRKMICRDDSRRFSAEQALRHPWIVSGGETTNQN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03762 274 CDD STKc_CAMK 8 263 - -
Trre1g03762 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03762 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Trre1g03762 274 Gene3D Transferase(Phosphotransferase) domain 1 94 274 - -
Trre1g03762 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 268 - -
Trre1g03762 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03762 274 SUPERFAMILY Protein kinase-like (PK-like) 5 266 IPR011009 -
Trre1g03762 274 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Trre1g03762 274 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 274 - -
Trre1g03762 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03762 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Trre1g03762 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03762 Trre-Chr1 36380468 36381411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03762 5 265 EF-hand Containing Proteins AT4G09570 46.415 9.24e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g03762 Pkinase 1.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03762 - K08794 gmx:548089 468.003