Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03725 ATGGCGAACCGGTGGTGGACCGGACCGGTAGGTCTAGGTGGGATGGACAACTCAGTAACTTCTTCTCCACTTCAAAAACCAGATCTGGGTTTCTCCATGAATGGAAGTGCCATTACAGGAGGATTAAACAACATTAACAACAATAACAACAACAATAACGAAGATCAAGATGAGAAAGAAAACAGCGACGAACAAAAAGGAGGTGGAATAGAAACAAACACATCCACCCGCCGTCCAAGAGGAAGACCATCAGGATCAAAAAACAAACCAAAACCACCAATATTCATAACAAGAGATAGCCCTAATGCACTTCGAAGTCATGTCATGGAAGTAGCAACAGGAACAGACATATCAGATTGTGTTATTCAGTTTGCTAGAAAAAGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACCGTCGTTAACGTTTCTCTCCGGCAACCAACAGGTCCCGGAGCTGTGGTGGCTCTTCCTGGTAGATTTGATATTCTGTCGTTAACTGGTTCTGTTCTTCCTGGACCTTCTCCTCCTGGTGCTACTGGTTTGACTATTTATCTTTCTGGAGGTCAGGGACAGGTGGTTGGCGGTGGTGTTGTTGGTCCACTTGTGGCTGCTGGACCGGTTATGTTGATGGCAGCGACTTTTTCGAATGCGACTTATGAGAGGTTGCCTGTGGAAGATGGTGATGATCAGGAGCAAGGACAGGGTGGTGGTGGTGGTGATGATGAGTCTCCAACTGCGGCGGGGATGGGACAGTTACCGGGTGGATCTGTCGGAGAAGGTTCGTCGTCGATACCGGTTTATAATAATTTGGGTGTTACAAATGGAGGACAACAACAGTTGTTGAATAATCATGAAGCTTATAATAATTCTCCTTGGAGTCATGGTAGAACACCATACTAA 906 0.4581 MANRWWTGPVGLGGMDNSVTSSPLQKPDLGFSMNGSAITGGLNNINNNNNNNNEDQDEKENSDEQKGGGIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVATGTDISDCVIQFARKRQRGICILSASGTVVNVSLRQPTGPGAVVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEQGQGGGGGDDESPTAAGMGQLPGGSVGEGSSSIPVYNNLGVTNGGQQQLLNNHEAYNNSPWSHGRTPY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03725 301 MobiDBLite consensus disorder prediction 1 101 - -
Trre1g03725 301 Gene3D - 104 233 - -
Trre1g03725 301 FunFam AT-hook motif nuclear-localized protein 104 232 - -
Trre1g03725 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 295 IPR014476 GO:0003680
Trre1g03725 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 218 IPR005175 -
Trre1g03725 301 Coils Coil 42 65 - -
Trre1g03725 301 ProSiteProfiles PPC domain profile profile. 101 236 IPR005175 -
Trre1g03725 301 PIRSF ESCAROLA 22 301 IPR014476 GO:0003680
Trre1g03725 301 CDD DUF296 105 188 IPR005175 -
Trre1g03725 301 MobiDBLite consensus disorder prediction 227 265 - -
Trre1g03725 301 MobiDBLite consensus disorder prediction 67 81 - -
Trre1g03725 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 228 - -
Trre1g03725 301 MobiDBLite consensus disorder prediction 36 52 - -
Trre1g03725 301 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03725 Trre-Chr1 35837022 35837927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03725 1 226 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 60.246 6.47e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03725 - - qsu:112038015 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03725 1 35837022 35837927 Trre1g03725 1 35837022 35837927 ECH