Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03716 ATGAAAACTGTAATTCTGTTGTTACTTCTTTTTAATCTTACTATTTATGCTTCTGCTACTGATTCTGATTCTGAATATGACCATTGTGACTGTGATGATGAAGATGCACTTTTCAGCATACATACAATTCTTGTTGGTCAAAAAGTCAGTGATTTTTTCATTGCAGTTGCTTATTTTTCAATACCAATTGAGCTTCTTTACTTTGTTAGTCGTTCTAATGTTCCTTTCAAATTGCTTTTCCTTCAATTCATAGCTTTCATAGTTCTTTGTGGTTTGACTCATTTGCTTAATGCTTATTCTTATCATGGTCCTCCTTCTTTTCATTTGTTGCTTTCTATAACTGTTGCTAAGTTCCTCACTGCTCTTGTGTCATGTGCAACTGCATTGACACTTCCGCCTTTAATTCCGCTCCTTCTTAAGATTAAGGTTAGGGAGCTTTTTCTGAGGCAGAATGTGATGGAATTGGGTCAAGAGGTTGGGATTATGAAAAAACAAAAGGAAGCTAGTTGGCATGTTAGGATGCTTACTAGGGAAATAAGGAAATCTCTTGATAAACATACTATTTTGTATACTACTCTTGTTGAGCTTTCTAAGGCTTTGGATTTGCATAATTGTGCTGTTTGGATGCCGAATGATGATAGGAGAGAGATGTATTTGACTCATGAATTGAAATCGGATTCTGGTAAGAGTTTTCATCATAATTCTATTCCTGTGAATGACCCTGATGTGTTAGAGATAAGGAAAACTAAAAGGGTTAGGATTTTGAGGCCGGAGTCTAAATTAGGAGCTGCAAGTAGTGGTGGTGGTAGTACTCAGGAGTTGGGTGCTGTAGCAGCTATTCGTATGCCGATGCTTCATGTTTCAAATTTCAAAGGTGGAACTCCGGAGTTGGTTGATACATGTTATGCTATACTGGTTTTGGTTCTTCCGAGTTCGAACTCTAGAGATTGGACTGCTCCAGAGATGGAGATAGTTGAGGTTGTTGCTGATCAGGTGGCAGTAGCACTTTCTCATGCGTCGGTTCTCGAAGAGTCTCATTTAATGAGACAGAAACTTGAAGAGCAAAACCGAGCGTTGCAGCACTCTCAAAAGAATGCAATGATGGCGAGCCAGGCTAGGAAGTCATTCCAAACAGTGATGAGCCATGGACTGAGGAGGCCTATGCATTCAGTTGTCGGGATGCTTTCATTGGTTCAAGAGGGTAATATGAAGCCTGAACAAAAGATTATTGGTGACACAATGTTGAAAGTAGGAAATGTGCTCACGAGTTTAGTAAACGATGTAATGGATATTTCTGAAAATAAAAAGGGTGGCCTCCAGTTAGAGACGAAACCTTTCCTTCTACATTCCATGTTGAGGGAAGCGGCTTGCATTGCCAAGTGCTTGTGTGTGTATCAAGGATTTGGTTTTCAAATCGATGTCCAGAAATCTTTGCCTGAAAAAGTTTTAGGCGACGAAGCAAGGACGTTTCAAGTAATTATGCATATTATTGGCTATTTATTGAACACATGTGATCGAGGGAATCTTGTTTTTCGGATTTTGCTTGCAAGTGATGGTGGTGATAAGGATGACAAAAAATTTGGTATATGGAAATCAAGTAGCGCAACTGAGTATGTACATATAAAATTTGATTTTCAGATCACTGGTAGTTCTCAGTCGGATGAATCAATTTCGACAAAACAGCAAATTGGTAGGAGGCTGAATCACAACAGTGAATCTAAGGAGGGTCTGAGCTTTAACATGTGCAGGAAATTGGTACAGATAATGCAAGGTACTATATGGATATTACCAAACTCTCAGGGTTTGGTGCAAGGCGTGTCACTTCTTCTAAAGTTTCAGACGGGACCATCACTTGAAAGATACTTGCTTGCACCTAAAGATTATTCAAATTCACAGTTTGGAGGCCTCAATATTTTGTTAGCAGAAGATGACGGTTTAAACAGGATCGTGACGAAGAAGCTACTCGAGAGGCTTGGTTGTCAAGTAACAACAGTTTCATCGGGATATGAATGCCTGGGTGCTATAAGTGGCTCTAGTGGTAGCTCATTCAAAATTATCATGTTGGATATTCACATGCCTGATGTGGATGGTTTTGAAGTTGCGACTAGGATCAGAAAATTCAACGGCCCTAATTGGCCTTTGATCATAGCTCTTATAGCAAATGCAGAAGAGCAAGTGAAGGATAGATGTATGCTGGCGGGAATGAATGGAGTGATTCGGAAACCAATCCTCCTTCATCAGATAGCGGATGAACTTAGAACAGTCCTACATCGTGCGGGTGAAAAACTGTGA 2292 0.3979 MKTVILLLLLFNLTIYASATDSDSEYDHCDCDDEDALFSIHTILVGQKVSDFFIAVAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGLTHLLNAYSYHGPPSFHLLLSITVAKFLTALVSCATALTLPPLIPLLLKIKVRELFLRQNVMELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPNDDRREMYLTHELKSDSGKSFHHNSIPVNDPDVLEIRKTKRVRILRPESKLGAASSGGGSTQELGAVAAIRMPMLHVSNFKGGTPELVDTCYAILVLVLPSSNSRDWTAPEMEIVEVVADQVAVALSHASVLEESHLMRQKLEEQNRALQHSQKNAMMASQARKSFQTVMSHGLRRPMHSVVGMLSLVQEGNMKPEQKIIGDTMLKVGNVLTSLVNDVMDISENKKGGLQLETKPFLLHSMLREAACIAKCLCVYQGFGFQIDVQKSLPEKVLGDEARTFQVIMHIIGYLLNTCDRGNLVFRILLASDGGDKDDKKFGIWKSSSATEYVHIKFDFQITGSSQSDESISTKQQIGRRLNHNSESKEGLSFNMCRKLVQIMQGTIWILPNSQGLVQGVSLLLKFQTGPSLERYLLAPKDYSNSQFGGLNILLAEDDGLNRIVTKKLLERLGCQVTTVSSGYECLGAISGSSGSSFKIIMLDIHMPDVDGFEVATRIRKFNGPNWPLIIALIANAEEQVKDRCMLAGMNGVIRKPILLHQIADELRTVLHRAGEKL 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03716 763 Coils Coil 342 369 - -
Trre1g03716 763 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 26 760 - -
Trre1g03716 763 ProSiteProfiles Histidine kinase domain profile. 379 616 IPR005467 -
Trre1g03716 763 SUPERFAMILY CheY-like 633 758 IPR011006 -
Trre1g03716 763 Pfam GAF domain 186 336 IPR003018 GO:0005515
Trre1g03716 763 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 598 IPR036890 -
Trre1g03716 763 PIRSF Ethylen_sen_hybr_HK 1 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Trre1g03716 763 Gene3D - 168 336 IPR029016 -
Trre1g03716 763 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Trre1g03716 763 FunFam Ethylene receptor 4 339 433 - -
Trre1g03716 763 CDD HATPase_ETR2_ERS2-EIN4-like 478 610 - -
Trre1g03716 763 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Trre1g03716 763 Gene3D - 337 434 - -
Trre1g03716 763 Pfam Response regulator receiver domain 638 750 IPR001789 GO:0000160
Trre1g03716 763 ProSiteProfiles Response regulatory domain profile. 637 756 IPR001789 GO:0000160
Trre1g03716 763 Gene3D - 636 762 - -
Trre1g03716 763 CDD REC_ETR-like 636 752 - -
Trre1g03716 763 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 357 436 IPR036097 GO:0000155|GO:0007165
Trre1g03716 763 Gene3D - 436 614 IPR036890 -
Trre1g03716 763 SMART gaf_1 184 346 IPR003018 GO:0005515
Trre1g03716 763 SUPERFAMILY GAF domain-like 187 339 - -
Trre1g03716 763 SMART REC_2 636 752 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03716 Trre-Chr1 35702431 35706075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03716 23 761 Miscellaneous Gene Families AT3G04580 59.067 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g03716 GAF 5.8e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03716 K14509 - gmx:100101892 1147.11