Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03715 ATGGAAGACTCTAACAACAACCAAGTGACCTCATTGTTCGAACATCATAACTTAAACACCGTCACCGTTAATCTCTCTCCAGTTAACGGTTCCGTTGATGGGACCCACACCGACCTTCATCATTCCGTTACGGAGAACAAGAAGAAACGTGGTAGGCCGAGAAAGTATGAGTCTCCTGAAGAAGCTCTCGCCGGTAGAAAAGCTATCGCCGCTAGAAAAGCCGCCGCCGCCGCTGCCGCCGCTGCTGCTGCGGCTGCTTCTACGACGTCGTTTTCGTCTTCTAATCATAATAAGCCGAAAAAGTTTCATTCGTCTTCTCTAGGTAATTCTAGAGAGGGATTTAATCTTCACATTGTTGCTGTTCCTGCTGGTGAGGATATTGGCCAACATATTATGTCGCTCATGCAAAAACATAGTCGGTGTGAGATGTGCATTCTGTCTGGATCTGGTTCCATCGCTAGTGCCACTCTTCGTCAGCCAGCAACCTCTGGAGGCAATATTACATATGAGGGTCGCTTTGACATTATTTCACTTACTGGATCCTATGTCCATAATGAATTTGATGGTCGTTCTGGTGGTCTCAGTGTATGCTTATCTCATTCTGATGGGCAACTTGTAGGCGGAAGCATTGCTGGACCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGCACATTTTCTATCAACACTACTGCTGGTATAAAAGGCGATATTTCTACCAGCAAGATATCATCACCAGTTGCTGAACCAGCATCAAATTTAGGCTTCCGCCCAGCAGTTAACTCTTCCAATGGGAACACAATCCCAGTAAACAAGGAGCATCAAGCCATTGGGGGAAGCCATTTCATGCATCAACAATATGGTGTAAATGTGGTACCTTTCCATCCCTCAGACTGGGGAAGTAGTCCGGATTCGAGAAATGCTGGCTTTGAACTGATAGGAAGAACAGGTCACGAAGCACACCAGTCTCCTGAGAACGGCGACTATTCCTAA 996 0.4659 MEDSNNNQVTSLFEHHNLNTVTVNLSPVNGSVDGTHTDLHHSVTENKKKRGRPRKYESPEEALAGRKAIAARKAAAAAAAAAAAAASTTSFSSSNHNKPKKFHSSSLGNSREGFNLHIVAVPAGEDIGQHIMSLMQKHSRCEMCILSGSGSIASATLRQPATSGGNITYEGRFDIISLTGSYVHNEFDGRSGGLSVCLSHSDGQLVGGSIAGPLKAAGPVQVIVGTFSINTTAGIKGDISTSKISSPVAEPASNLGFRPAVNSSNGNTIPVNKEHQAIGGSHFMHQQYGVNVVPFHPSDWGSSPDSRNAGFELIGRTGHEAHQSPENGDYS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03715 331 MobiDBLite consensus disorder prediction 24 63 - -
Trre1g03715 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 228 IPR005175 -
Trre1g03715 331 MobiDBLite consensus disorder prediction 38 62 - -
Trre1g03715 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 254 IPR039605 GO:0003680
Trre1g03715 331 Gene3D - 115 242 - -
Trre1g03715 331 CDD DUF296 115 227 IPR005175 -
Trre1g03715 331 ProSiteProfiles PPC domain profile profile. 110 252 IPR005175 -
Trre1g03715 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 228 - -
Trre1g03715 331 MobiDBLite consensus disorder prediction 88 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03715 Trre-Chr1 35694680 35699625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03715 47 330 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 42.810 8.93e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03715 - - gmx:100809675 337.421