Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03709 ATGGCTTCTCTCTCTTGCTCTGCCACAGACCTCCTCACTGCTGCCGCAAACGCAACCGCTGTGGCAAACTATCTCTGCACCCAATTTGATGCCATCTCCAAAAAGTTCAGTGATACTACTTATGCAATAGACAACACCTACCTTCTCTTCTCAGCTTACTTGGTCTTTGCCATGCAGCTTGGTTTCGCCATGCTCTGCGCCGGCTCTGTTCGAGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTTGACGCAGCTGCCGGTGGCCTTTCATATTACCTTTTCGGCTTCGCTTTCGCCTTCGGAGCACCCTCCAACGGCTTCATTGGCCGCCACTTTTTCGGTCTAAGGGATTACCCTTCACCTTCACCCTCTGGAGGAGACTACAGTTTCTTCCTCTACCAATGGGCCTTTGCCATAGCCGCTGCGGGCATCACTAGTGGCTCCATTGCAGAGAGAACACAGTTTGTCGCGTATCTCATATATTCTTCTTTCTTAACCGGTTTTGTTTATCCCATCGTTTCGCATTGGGTTTGGTCCGTTGATGGTTGGGCCAGCCCAACCCGAACCGATGGTGATGTTTTATTCGGCTCTGGGGTAATTGACTTTGCTGGTTCAGGTGTGGTTCACATGGTTGGTGGTATAGCAGGGCTATGGGGGGCATTCATAGAAGGTCCGAGAATCGGCCGGTTTGACCGGACCGGTCGAGTTGTTGCATTAAAAGGACATAGCGCATCATTGGTAGTGTTGGGTTCATTTTTATTATGGTTCGGTTGGTATGGGTTCAACCCCGGTTCGTTTTTAACAATTGTAAAAGGCTACAACAATAACAAAGGAGATTATTATGGTCAATGGAGTGCTATTGGAAGGACAGCCGTCACAACAACATTGGCTGGATGTACTGCGGCTTTAACAACTCTGTTTAGTAAACGGTTATTGGTTGGACACTGGAACGTGACTGACGTGTGTAACGGTTTACTTGGCGGTTTTGCTGCAATAACCGCGGGTTGTTCTGTTGTAGAACCATGGGCCGCGATTGTGTGTGGGTTCATTGCAGCTTGGGTTTTGATTGGACTAAATAAACTAGCGGTTAAGGTGAAGTATGATGATCCTTTAGAGGCGGCGCAATTACACGGAGGGTGTGGCGCGTGGGGGGTGTTGTTTACAGGATTGTTTGCGAAAGGGGAATATGTTGACGAGATTTATGGGATTGGGAGGCCGTATGGATTGTTGATGGGTGGTGGAGGGAAGTTGTTTGCGGCGCAAGTGGTTGAGGTGTTGGTGGTATGTGTGTGGGTTACTGTGACAATGGCACCATTGTTTTATGGGCTGAATAAGATGAAATTGTTGAGGATTTCAAGGGATGATGAAACTGCGGGGATGGATTTGACAAGACATGGTGGATTTGCTTACGCGTATCATGATGAAGATGATGATGAGTCGATCAAGAGATTAGGGTTTATGATGGGTAGGATTGAGCCTGCCGGGAGTATAACTCCATCCGCTACTGGACATGATTCGCAGACGCCAACCACTGCACCACCAGTGTGA 1554 0.4839 MASLSCSATDLLTAAANATAVANYLCTQFDAISKKFSDTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLRDYPSPSPSGGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWVWSVDGWASPTRTDGDVLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRTGRVVALKGHSASLVVLGSFLLWFGWYGFNPGSFLTIVKGYNNNKGDYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAWVLIGLNKLAVKVKYDDPLEAAQLHGGCGAWGVLFTGLFAKGEYVDEIYGIGRPYGLLMGGGGKLFAAQVVEVLVVCVWVTVTMAPLFYGLNKMKLLRISRDDETAGMDLTRHGGFAYAYHDEDDDESIKRLGFMMGRIEPAGSITPSATGHDSQTPTTAPPV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03709 517 NCBIfam ammonium transporter 44 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre1g03709 517 FunFam Ammonium transporter 25 487 - -
Trre1g03709 517 Pfam Ammonium Transporter Family 47 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre1g03709 517 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre1g03709 517 MobiDBLite consensus disorder prediction 497 517 - -
Trre1g03709 517 Gene3D Ammonium transporter AmtB like domains 21 489 IPR029020 -
Trre1g03709 517 PANTHER AMMONIUM TRANSPORTER 17 475 - -
Trre1g03709 517 SUPERFAMILY Ammonium transporter 41 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03709 Trre-Chr1 35609725 35611278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03709 2 504 Inorganic Solute Cotransporters AT1G64780 76.172 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03709 K03320 K07573 gmx:100797209 797.349