Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03703 ATGATGAAAAAAGAATCAGAAGTAAAAAAACCACGTTCAAGAGGAAAGGGAGGACCAGAGAATGCATTATGCAATTATAGAGGAGTGAGGCAGAGGACTTGGGGAAAATGGGTTGCTGAAATAAGAGACCCCAAACATGGTGCTAGGCTTTGGCTAGGAACATTCAATACCTCTATTGAAGCTGCACTTGCCTATGATAATGCTGCAAAAAGGCTTTATGGTAAATCTGCTAGGCTCAATTTGGCACCATCACATAACACTCCAACAACAAGTGTAGAGGTTGATCAGAATTTGATCATTCCTACACAATCTAATGATACCAATTGCATTGAAGAAAATTCTAATGATAATACTAGTAAGGGTGTGTTATGTGAAACTAATTTGGACCTTGAATTACAAAGTGTTCCATGGGATACTAGTAATTTTATTATGGATGATTTTATGGAATTGAATTATAGTGTACAAGATTGGGATCCATCATTACTAGAGATTTAA 495 0.3636 MMKKESEVKKPRSRGKGGPENALCNYRGVRQRTWGKWVAEIRDPKHGARLWLGTFNTSIEAALAYDNAAKRLYGKSARLNLAPSHNTPTTSVEVDQNLIIPTQSNDTNCIEENSNDNTSKGVLCETNLDLELQSVPWDTSNFIMDDFMELNYSVQDWDPSLLEI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03703 164 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 116 - -
Trre1g03703 164 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Trre1g03703 164 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Trre1g03703 164 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Trre1g03703 164 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Trre1g03703 164 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Trre1g03703 164 MobiDBLite consensus disorder prediction 1 16 - -
Trre1g03703 164 Gene3D AP2/ERF domain 25 82 IPR036955 GO:0003700|GO:0006355
Trre1g03703 164 CDD AP2 24 84 IPR001471 GO:0003700|GO:0006355
Trre1g03703 164 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Trre1g03703 164 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Trre1g03703 164 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03703 Trre-Chr1 35545025 35545519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03703 9 82 AP2-EREBP Transcription Factor Family AT5G18450 72.973 5.54e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g03703 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03703 - - mtr:11435109 241.891