Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03683 ATGGCCAACAATGAAGAACAAACAAATGCATTGAAGGATCAGTTGAAGGAACTTGTTAATACTATTGTGGAAAGTGAAGATTACACTGTACATGCTGCTGATGAAGCTATAACTGCTCTTTCTGTTCTCAGAGATATGAAATGCAGTGCTTCTTTCTCGCGTAAATTGGATTGTTTATCTGTTTCTGTTCCTCCACAGTTTCGATGTCCCATCTCAGGTCATGTTATGACGGATCCTGTTATCTTGGTTAATGGACAGACTTATGATCGACCGTTCATCCAAAAGTGGCTGAATGAAATCCACAAAACTTGCCCTCAAACTCAGGATGTCCTCTCTCACTCCATCCTTTCTCCTAATTATTTGGTCCATGACATGATTTCAAGGTGGTGTAAGGAGCATGGAACTGAGCTACCAATGCCTATTGGGGACATTGACAATGGTGAGGTAAATGAAGTGCACAAATTCCGTTTACATTCGTTACTTCACAAACTGTCATTACCTATGCTGGACCAAAAAGAAGCTGCAAGAGAGCTTCGCCTGTTATCGAAGCGAATGCCTTCGTTTCGAACACTGTTTGGTGACTCAGAAGTGATTCAGAAATTACTCACTCCATTTTCACCCGGCATGGCTTGTATTGATCCAGAACTCCAAGAGGATTTGATCACAGCTGTTCTAAATCTCTCAATCGACGAAAAAAATAAGAGTGTTTTCGCAGAGGATGAAAAGCTTATCGCCTTTATTATCTATTCGTTGAAATCAGGAACCATTCAAACCAGAAGCAATGCTGCAGCAGCTATTTTTTCATTATCAGCACTTGATATCAACAAACACATCATTGGAAAAACTGGTGCCATTAAATATTTGGTCGATCTTTTAGAAAATGGAAATCCATCAGCAATGAAAGATGCTGCTTCGGCTATATTCAATCTATGTATTGCACATGAAAATAAAGCGAAGACTGTTCAAGAAGGTGCAATTCAGGTTATTCTCAGCAAGATCATCGTGGACCATGTTCTAGTTGACGAGCTTTTGGCCTTATTGGCACTTCTCTCGAGCCATTCCAAGGCTGTTGAGGCATTGGGAAGTCACGGCACTGTCCCTTTCTTAATGGATATTTTAAGGGACAACAGTGTTTCGGACTGGAGCAAGGAGAACTGTGTTTCAATCTTGTACATAATATTTTTCAACGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATAGCGAATGGTACATTGTCTAAGCTTGCACAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGCGGTATTCTCGATAGGCTCAAGATAGGTCAATCCCCTCGAACCACAACACTTGAGGGTCTATTTGGTGTCAACTTTAAACAACTATGA 1377 0.4038 MANNEEQTNALKDQLKELVNTIVESEDYTVHAADEAITALSVLRDMKCSASFSRKLDCLSVSVPPQFRCPISGHVMTDPVILVNGQTYDRPFIQKWLNEIHKTCPQTQDVLSHSILSPNYLVHDMISRWCKEHGTELPMPIGDIDNGEVNEVHKFRLHSLLHKLSLPMLDQKEAARELRLLSKRMPSFRTLFGDSEVIQKLLTPFSPGMACIDPELQEDLITAVLNLSIDEKNKSVFAEDEKLIAFIIYSLKSGTIQTRSNAAAAIFSLSALDINKHIIGKTGAIKYLVDLLENGNPSAMKDAASAIFNLCIAHENKAKTVQEGAIQVILSKIIVDHVLVDELLALLALLSSHSKAVEALGSHGTVPFLMDILRDNSVSDWSKENCVSILYIIFFNDKTKRKEIRDDEIANGTLSKLAQCGTSRAKRKACGILDRLKIGQSPRTTTLEGLFGVNFKQL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03683 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Trre1g03683 458 CDD RING-Ubox_PUB 64 116 IPR045210 -
Trre1g03683 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 136 IPR013083 -
Trre1g03683 458 Coils Coil 1 21 - -
Trre1g03683 458 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Trre1g03683 458 Pfam Armadillo/beta-catenin-like repeat 275 311 IPR000225 GO:0005515
Trre1g03683 458 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Trre1g03683 458 PANTHER U BOX DOMAIN-CONTAINING 7 435 - -
Trre1g03683 458 Gene3D - 169 447 IPR011989 -
Trre1g03683 458 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Trre1g03683 458 SUPERFAMILY RING/U-box 51 136 - -
Trre1g03683 458 SUPERFAMILY ARM repeat 171 436 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03683 Trre-Chr1 35348165 35350372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03683 1 443 U-box Gene Family AT5G18320 39.829 2.96e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03683 - - gmx:100806132 531.176