LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g03681	ATGAACTGCTTTCCGTGTTGTGGCCAAAAAAATAAGAAAAGTAATAGTATGAAAGACCATGATTCTCCCACACAACAGGAAATCACTTCTGATATGAAGAAACAAAGGGGGGATGAGCAAATCCAAGGAGACCCTACAAACATTAATGCGCATAATTTCACTTTTCGTGAACTTGCAACTGCGACAAAGAATTTTCGACAGGAATGTCTCCTTGGTGAAGGAGGATTTGGAAGAGTTTACAAAGGGGTTATTCCTACAACTGGACAGGTTGTGGCCGTGAAGCAACTCGACAGACATGGGATGGAAAACAGCAAGGAATTTCTGTCTGAAGTTTCTCTGCTGAGTCTTGTTCACCATGACAATCTTGTCAATCTAATTGGTTATTGTGCTGATGGCGATCAACGTCTTTTGGTTTATGAATACTTTCCTGGCTCGAATCTTGAAGAACGTCTTTTTGACAATAAAACGGATGAACCACCATTAAATTGGTATGAAAGAATGAAAGTAGCATCAGGTGCATCGAAAGGGCTAGAATACTTGCATGACAGCGCGAATCCTCCAATCATATACCGTGACTTGAAAGCAGCCAACATCTTATTGGATGTTGATCTTAATTCGAAACTATATGATTTTGGAATGGCAAGACTTTGCGGTGGAGACAAGATGAACCATGCTCCACCAAGAGTTATGGGTACATATGGTTATTGTGCTCCTGAATATACAAGAACAGGTCATTTCTCATTGAAATCAGACGTATATAGTTTCGGAGTTGTCATGCTTGAACTTATCACTGGTCGACGTGCCATTGACACCACAAGATCAAACGAAGAGCAAAATCTAGTTTCATGGGCACAACCCTTATTTAGGGACCCAAAAAAATATCCAGATATGGCAGATCCACTTCTCAATAAGCAATTTCCAGAAAAGGATCTCAACCAAGCTGTTGCAATAGTAGCAATGTGCTTACAAGAGGAACCAGAAGCTCGTCCTTTGATCGGCGACGTTGTAACCGCTCTGAGTTTTCTTTCGACAGTTCCAACGGAACCTATTCCACCACCCTTACACCCCGCTGCTACCTCTGACTCTAAGCGTAGTGTTGCTACTGAAAGCGAATACGAAAGTGAGACTGGAAGTGAATCAGAAGGAGAATCTGATGTCTCAAGCCAACATCAAAAAAGGGTGTCTTCGAAGAAATCAAGCCGAAAAAGTGGCACAAGATCAAGGAACAAAACAATCAGTAAAGATTCAGCAGATGAAAGTGCTTCTTCAAGTGGCAAAAGCAGTAAAAAATGGCAAAGCTTTGTTGGTAATATAAGCCAAAAGACTAACAGCTCAATAAAATCTTCTATCAGAGAATTAAGTCAGAAGAGCAGTAAAAAATCTTCAAGCAAAGAAAAAAGCCAGAAAAACAGTAGAAAGTCTTCCAAAAGAGGTTTAAGCCAAAAGGGAAGTGGAAAATCTTCTGCTAGAGTTTCGAGCTGCGTGGAATCGGAAGATGAAAGCATGATTTCATCTCATAGAACTGCCTCATCAAGCCAATATACAAGCAGCTGTATGTCCGATCGTAGCAGCAGCCGAGGAAGTGGAAGTATTTGCTCCGACATTAACGGTAGCAGAAGGCTAGAAGAAAGCATGCGTTTAGACAGGGAATCTGATGATGGTAGCAGTGAATAA	1674	0.4116	MNCFPCCGQKNKKSNSMKDHDSPTQQEITSDMKKQRGDEQIQGDPTNINAHNFTFRELATATKNFRQECLLGEGGFGRVYKGVIPTTGQVVAVKQLDRHGMENSKEFLSEVSLLSLVHHDNLVNLIGYCADGDQRLLVYEYFPGSNLEERLFDNKTDEPPLNWYERMKVASGASKGLEYLHDSANPPIIYRDLKAANILLDVDLNSKLYDFGMARLCGGDKMNHAPPRVMGTYGYCAPEYTRTGHFSLKSDVYSFGVVMLELITGRRAIDTTRSNEEQNLVSWAQPLFRDPKKYPDMADPLLNKQFPEKDLNQAVAIVAMCLQEEPEARPLIGDVVTALSFLSTVPTEPIPPPLHPAATSDSKRSVATESEYESETGSESEGESDVSSQHQKRVSSKKSSRKSGTRSRNKTISKDSADESASSSGKSSKKWQSFVGNISQKTNSSIKSSIRELSQKSSKKSSSKEKSQKNSRKSSKRGLSQKGSGKSSARVSSCVESEDESMISSHRTASSSQYTSSCMSDRSSSRGSGSICSDINGSRRLEESMRLDRESDDGSSE	557

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	348	557	-	-
	Trre1g03681	557	SMART	serkin_6	65	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g03681	557	Pfam	Protein kinase domain	67	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	453	469	-	-
	Trre1g03681	557	FunFam	probable serine/threonine-protein kinase RLCKVII	37	141	-	-
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	477	537	-	-
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	1	46	-	-
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	416	452	-	-
	Trre1g03681	557	SUPERFAMILY	Protein kinase-like (PK-like)	51	372	IPR011009	-
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	539	557	-	-
	Trre1g03681	557	ProSitePatterns	Protein kinases ATP-binding region signature.	71	94	IPR017441	GO:0005524
	Trre1g03681	557	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	188	200	IPR008271	GO:0004672\|GO:0006468
	Trre1g03681	557	PANTHER	OS07G0668900 PROTEIN	3	347	-	-
	Trre1g03681	557	Gene3D	Transferase(Phosphotransferase) domain 1	143	344	-	-
	Trre1g03681	557	ProSiteProfiles	Protein kinase domain profile.	65	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g03681	557	FunFam	Serine/threonine-protein kinase PBS1	142	353	-	-
	Trre1g03681	557	Gene3D	Phosphorylase Kinase; domain 1	35	141	-	-
	Trre1g03681	557	MobiDBLite	consensus disorder prediction	13	40	-	-
	Trre1g03681	557	CDD	STKc_IRAK	71	339	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g03681	Trre-Chr1	35343366	35345816	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g03681	1	401	Glycoside Hydrolase	AT3G07070	54.524	8.18e-155	447

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Trre1g03681		Pkinase	8.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g03681	-		-	gmx:100805544	554.288