Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03636 ATGGGTCCGTACAACAAACACTGGCCTAGCATGTTTAAGAGGTCAGATTATGAGAATTCACAACATGGCATCAACTCCTTCACCGGTGGTCATGATGATGAGAGAACTTCACAACCACCAAGGCCAAGATGGATTCCAAGACCAGAGCAAATCCAAATTTTGGAAGATATCTTCAACTCAGGAATGATGAATCCTCCAAGAGAAGAAATTAAGAAAATTCGTGAACGATTACAAGAATATGGCCCAGTTGGTGAAATAAATGTTTTCTATTGGTTCCAAAACCACAAAGCAAGGAAAAATAAACAAACACAGCCCAACAATATGATTCAAAGAAAAAGAAAAAGCAAAAACTCGGTAGCTCAAGCCATCACAATACCTTATAATTCATTCTCATCATCTTCCTCTTATCATCAAAATGCATCTCCCAATAAAATAGTGGTACCTAATAATGTTGAATTCCCTACTAATAATGGGGTGGTTAATTTGACTAATGATTCCCCTAATGATACAATCTTTGGGAACCAAAACCTAGCTACTGATTATTTTGACACTCCCATTCAAACTGATTTTCAACTGCCTACACCCCTTTTCTTCTCTTTCCCTAGTCAGTTCTCTAATATGACTCAGCAGTTGCCTCAAAATGAGATCTTCATGAACTGTGCAAGTGGAATTCCAATGAATAACCTGTATGATCAAGGGAATATCCAAGATCAGGAGGTAGATATGAATATGATGCAGCAACAGCAACAACAACAACAAGAAGATCCACAACTGATCAGTTCGGCTGTGATTTCGAATTCACTCCATGATGATTCAGATCTTCCTCCTTTTCCTCCCATTATTATTGATGCACCCGTTGTTGATCCATTCTCCATCACTCAATTTCAAGGTGTTGGTGAGCCGGATCATTTTACGGGGAAATGTACTGTAAGTATTGACAACCAGATAATTGAGGTTGATTCGGGGCCCATTAACATCCATCAAATTTTTGGGGATGAAGCTATTCTCGTTCACTCCTCTGGCCAGCTTGTTCTCACCGACGAGTGGGGTGTAACCCTTGATTCACTCCAACATGGTGCTTCGTATTTTCTGGTATGCATATTATCTTATAATAACTGCTTTGATAATTACATTTTCCTATACTAA 1146 0.3883 MGPYNKHWPSMFKRSDYENSQHGINSFTGGHDDERTSQPPRPRWIPRPEQIQILEDIFNSGMMNPPREEIKKIRERLQEYGPVGEINVFYWFQNHKARKNKQTQPNNMIQRKRKSKNSVAQAITIPYNSFSSSSSYHQNASPNKIVVPNNVEFPTNNGVVNLTNDSPNDTIFGNQNLATDYFDTPIQTDFQLPTPLFFSFPSQFSNMTQQLPQNEIFMNCASGIPMNNLYDQGNIQDQEVDMNMMQQQQQQQQEDPQLISSAVISNSLHDDSDLPPFPPIIIDAPVVDPFSITQFQGVGEPDHFTGKCTVSIDNQIIEVDSGPINIHQIFGDEAILVHSSGQLVLTDEWGVTLDSLQHGASYFLVCILSYNNCFDNYIFLY 381
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03636 381 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 365 IPR044557 GO:0003700|GO:0050793
Trre1g03636 381 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
Trre1g03636 381 MobiDBLite consensus disorder prediction 19 33 - -
Trre1g03636 381 Pfam Homeodomain 41 99 IPR001356 GO:0003677
Trre1g03636 381 Gene3D - 28 120 - -
Trre1g03636 381 MobiDBLite consensus disorder prediction 19 45 - -
Trre1g03636 381 SMART HOX_1 39 106 IPR001356 GO:0003677
Trre1g03636 381 ProSiteProfiles 'Homeobox' domain profile. 37 102 IPR001356 GO:0003677
Trre1g03636 381 CDD homeodomain 49 102 IPR001356 GO:0003677
Trre1g03636 381 Coils Coil 235 255 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g03636 Trre-Chr1 34345938 34348920 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03636 307 365 Wox Gene Family AT5G45980 49.153 1.13e-10 60.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre1g03636 Homeodomain 3.9e-13 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03636 - - tpra:123914706 477.633