Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03625 ATGGAATTTCAATCCATAATTCCAATATCTCAAGGTTCAATGTGGATGATGAAATTGAGGCCAAGTGAAACAATGGATTCTGAATCTTATCCACAACGTCCAGGGGAATCAGATTGTTCATATTACATCAAAACTGGCCTTTGTAGATTCGGTGTCACGTGTCGATTTAACCATCCTCCTAACAGAAAACTGGCTATTGTATCTGCAAGAACAATTGGCGAGTTCCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATATGAAGACAGGAACTTGCAAATTTGGAGTCACATGCAAATTTCATCATCCTAGAGACCAAGCTGAGATTTCTGGAAGAGTTGCCTTAAACACTTTAGGCTATCCACTTCGCCCCAATGAGGCTGAATGCAGCTATTATTTGAGAACAGGAGAATGCAAATTTGGTAACAATTGTAAATTCCATCATCCTCAGCCAAGTAATATGATGCTTTCATTAAGGAGTTCTCCCATTTACCCTACCCTTCATTCTCCAAATCCATCCTATGTTCCTTCAAGTTATACACCTTTGATTATGCCTGGATGGAGTGCATACAATGGTCAAATGGGATCAATGATCTCTACACCTCCAGCCAGTCCATTGCAAAGGGAGAACATATTTCCCGAGAGACCTGGTCAGCCCGAATGCAAATTCTACATGAAAACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCAACCACCCGCGTCAAAGACTAATTTCTGCTTCTCCTGACTGTCTCTTGAGTCCCATGGGCCTTCCTTTACGTCCCGGAGAACCTATGTGTGTATTCTATTCGCGCTACGGCATATGTAAATTTGGACCAAGTTGCAAGTTTAACCATCCAATGGGAATTTTCAGCTATGATGTATCCGCATCTCCTTCTGTTAACGCCACTGACAGGCGTCTATTAGGACCTTCATCGGCAACTGCTACATTACTTGAAGAGTCAAGCTCATCAAAACCGAGAAGGCTTTCAATATCAGAGACAAGACAGGTTCCTTCTGATGATGACGACGACGACATTGATGAAGATAGATGA 1062 0.4237 MEFQSIIPISQGSMWMMKLRPSETMDSESYPQRPGESDCSYYIKTGLCRFGVTCRFNHPPNRKLAIVSARTIGEFPERIGQPECQYYMKTGTCKFGVTCKFHHPRDQAEISGRVALNTLGYPLRPNEAECSYYLRTGECKFGNNCKFHHPQPSNMMLSLRSSPIYPTLHSPNPSYVPSSYTPLIMPGWSAYNGQMGSMISTPPASPLQRENIFPERPGQPECKFYMKTGDCKFGAVCRFNHPRQRLISASPDCLLSPMGLPLRPGEPMCVFYSRYGICKFGPSCKFNHPMGIFSYDVSASPSVNATDRRLLGPSSATATLLEESSSSKPRRLSISETRQVPSDDDDDDIDEDR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03625 353 ProSiteProfiles Zinc finger C3H1-type profile. 78 106 IPR000571 GO:0046872
Trre1g03625 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
Trre1g03625 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 105 IPR000571 GO:0046872
Trre1g03625 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 60 IPR000571 GO:0046872
Trre1g03625 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 290 IPR000571 GO:0046872
Trre1g03625 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Trre1g03625 353 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Trre1g03625 353 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Trre1g03625 353 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Trre1g03625 353 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Trre1g03625 353 SMART c3hfinal6 263 290 IPR000571 GO:0046872
Trre1g03625 353 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Trre1g03625 353 SMART c3hfinal6 78 105 IPR000571 GO:0046872
Trre1g03625 353 SUPERFAMILY CCCH zinc finger 126 152 IPR036855 GO:0046872
Trre1g03625 353 FunFam Zinc finger nuclease 2 32 109 - -
Trre1g03625 353 SUPERFAMILY CCCH zinc finger 220 245 IPR036855 GO:0046872
Trre1g03625 353 PANTHER PROTEIN PHOSPHATASE RELATED 20 313 - -
Trre1g03625 353 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Trre1g03625 353 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Trre1g03625 353 ProSiteProfiles Zinc finger C3H1-type profile. 263 291 IPR000571 GO:0046872
Trre1g03625 353 Gene3D - 215 294 - -
Trre1g03625 353 Gene3D - 31 117 - -
Trre1g03625 353 SUPERFAMILY CCCH zinc finger 36 61 IPR036855 GO:0046872
Trre1g03625 353 Gene3D - 118 178 - -
Trre1g03625 353 SUPERFAMILY CCCH zinc finger 266 290 IPR036855 GO:0046872
Trre1g03625 353 MobiDBLite consensus disorder prediction 316 336 - -
Trre1g03625 353 MobiDBLite consensus disorder prediction 316 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03625 Trre-Chr1 34062349 34064960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03625 14 352 C2H2 Transcription Factor Family AT3G02830 53.846 1.06e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g03625 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03625 - - gmx:100802536 530.791