Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03624 ATGGCAACAAGGGGAGATGGAGAACTCCATGCAGATGTTGAAGTTCAACAATCACCATCAAATTTTTCATTTCCAAAACCTCCTGAAGGAAATGATGCAAATCAAGATGAACAAGTTATCAACATGCCGAATGATGCAAATGCAATGATGGAAATTCAAAGGGCTAGAAAAGGAAAAATGCCAATGATTTATTCTGAAGGAGTGTGTGCCAAAAAACCTATTGTAGGTGGTGATGAAGTATCAACTGATGAAGAAGTTCCAAATGCAATTGCTAGTGATAAAGAAAGTCACATTGGTGGAACAATGTTGCTTCAACATGATGATGCTGATAGTGGATCTTGTTCACAAAGGAAGAGGAAGATGGACTTTTCTGAATACTATAAACCACCTCGTCCTAGGATCAACGTTGGGCCAAGATTAGTGGTCCGAGTTGAAAGTGACGAAGACAAGTTGGACGACGGTTATCGTTGGCTTAAGTATGGACAAAAGTATGTCAAAGGAAATCCTAATCACCCAAGGGCATATTATAGGTGCACAGATCCACACTGCAATATAAGAAAACAAGTTGAGAGAGATGCCAGAAATTCAAGATATGTGATTGTCGCATATGAAGGGAAGCACAACCATGATGTTCCCCCGGAACAAAGAGGCATATCATACTCAACTAGTACTACTCCAACCGTTGTAGGACCTGAGAATGTTGGCACGCCACCACCACTGGCATCGCCTACGATTCTCTCTTTCACTCCCTTAAACCACCAGCCAAACAACAGATTCGTGAATGAATCATATGATATGGATTTTGCTGCTGCTGCTGCTGCTCGAGTTGCTGCCCCTCAAGCTGGACCTATTATTGGTGGGAATGTACGGTCTCCTGGATTTCCAATATCTCCACCACTTCGACCATCTGATAATGTACCAGATGGTCGTGATTTTCTTCGAATTGGTGGGTATGGCATTGCTGATGTTCCTTTCAGAGGTACTTCACCACCAACTGATGAGGAAGCTAAGGATGGTCATAACAATGAATGA 1032 0.4234 MATRGDGELHADVEVQQSPSNFSFPKPPEGNDANQDEQVINMPNDANAMMEIQRARKGKMPMIYSEGVCAKKPIVGGDEVSTDEEVPNAIASDKESHIGGTMLLQHDDADSGSCSQRKRKMDFSEYYKPPRPRINVGPRLVVRVESDEDKLDDGYRWLKYGQKYVKGNPNHPRAYYRCTDPHCNIRKQVERDARNSRYVIVAYEGKHNHDVPPEQRGISYSTSTTPTVVGPENVGTPPPLASPTILSFTPLNHQPNNRFVNESYDMDFAAAAAARVAAPQAGPIIGGNVRSPGFPISPPLRPSDNVPDGRDFLRIGGYGIADVPFRGTSPPTDEEAKDGHNNE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03624 343 SMART WRKY_cls 151 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g03624 343 Gene3D WRKY domain 137 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g03624 343 MobiDBLite consensus disorder prediction 320 343 - -
Trre1g03624 343 SUPERFAMILY WRKY DNA-binding domain 145 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g03624 343 ProSiteProfiles WRKY domain profile. 146 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g03624 343 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 230 IPR044810 GO:0003700
Trre1g03624 343 MobiDBLite consensus disorder prediction 14 40 - -
Trre1g03624 343 MobiDBLite consensus disorder prediction 1 40 - -
Trre1g03624 343 Pfam WRKY DNA -binding domain 152 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03624 Trre-Chr1 34059567 34061328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03624 100 226 WRKY Transcription Factor Family AT2G38470 48.837 1.26e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g03624 WRKY 1.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03624 - K18835 mtr:25484596 265.003