Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03623 ATGGAAAACAACAAAAACAATGAAGTTCATGTTGGTTCATCTGCCCAACAGCGAGAGAAAATGTATTTGTTTGATTTAAATGAGGTTTCTCCTTCTTTTAATCATTTTCAGGCTTCTGTTGATGATTGCAATATGGCAACAAGGGGAGATGGAGAACTCCATGCAGATGTTGAAGTTCAACAATCACCATCAAATTTTTCATTTCCAAAACCTCCTGAAGGAAATGATGCAAATCAAGATGAACAAGTTATCAACATGCCGAATGATGCAAATGCAATGATGGAAATTCAAAGGGCTAGAAAAGGAAAAATGCCAATGATTTATTCTGAAGGAGTGTGTGCCAAAAAACCTATTGTAGGTGGTGATGAAGTATCAACTGATGAAGAAGTTCCAAATGCAATTGCTAGTGATAAAGAAAGTCACATTGGTGGAACAATGTTGCTTCAACATGATGATGCTGATAGTGGATCTTGTTCACAAAGGAAGAGGAAGATGGACTTTTCTGAATACTATAAACCACCTCGTCCTAGGATCAACGTTGGGCCAAGATTAGTGGTCCGAGTTGAAAGTGACGAAGACAAGTTGGACGACGGTTATCGTTGGCTTAAGTATGGACAAAAGTATGTCAAAGGAAATCCTAATCACCCAAGGGCATATTATAGGTGCACAGATCCACACTGCAATATAAGAAAACAAGTTGAGAGAGATGCCAGAAATTCAAGATATGTGATTGTCGCATATGAAGGGAAGCACAACCATGATGTTCCCCCGGAACAAAGAGGCATATCATACTCAACTAGTACTACTCCAACCGTTGTAGGACCTGAGAATGTTGGCACGCCACCACCACTGGCATCGCCTACGATTCTCTCTTTCACTCCCTTAAACCACCAGCCAAACAACAGATTCGTGAATGAATCATATGATATGGATTTTGCTGCTGCTGCTGCTGCTCGAGTTGCTGCCCCTCAAGCTGGACCTATTATTGGTGGGAATGTACGGTCTCCTGGATTTCCAATATCTCCACCACTTCGACCATCTGATAATGTACCAGATGGTCGTGATTTTCTTCGAATTGGTGGGTATGGCATTGCTGATGTTCCTTTCAGAGGTACTTCACCACCAACTGATGAGGAAGCTAAGGATGGTCATAACAATGAATGA 1164 0.4132 MENNKNNEVHVGSSAQQREKMYLFDLNEVSPSFNHFQASVDDCNMATRGDGELHADVEVQQSPSNFSFPKPPEGNDANQDEQVINMPNDANAMMEIQRARKGKMPMIYSEGVCAKKPIVGGDEVSTDEEVPNAIASDKESHIGGTMLLQHDDADSGSCSQRKRKMDFSEYYKPPRPRINVGPRLVVRVESDEDKLDDGYRWLKYGQKYVKGNPNHPRAYYRCTDPHCNIRKQVERDARNSRYVIVAYEGKHNHDVPPEQRGISYSTSTTPTVVGPENVGTPPPLASPTILSFTPLNHQPNNRFVNESYDMDFAAAAAARVAAPQAGPIIGGNVRSPGFPISPPLRPSDNVPDGRDFLRIGGYGIADVPFRGTSPPTDEEAKDGHNNE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03623 387 Pfam WRKY DNA -binding domain 196 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g03623 387 SMART WRKY_cls 195 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g03623 387 SUPERFAMILY WRKY DNA-binding domain 189 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g03623 387 MobiDBLite consensus disorder prediction 364 387 - -
Trre1g03623 387 ProSiteProfiles WRKY domain profile. 190 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g03623 387 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 91 265 IPR044810 GO:0003700
Trre1g03623 387 Gene3D WRKY domain 181 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03623 Trre-Chr1 34058292 34061328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03623 144 270 WRKY Transcription Factor Family AT2G38470 48.837 1.48e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g03623 WRKY 2.3e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03623 - K18835 mtr:25484596 299.286