Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03613 ATGAGGTCATTGATGGGGACCGAGCTTATGAGGATATGTGTTAAAGAAGATAATGACGATTTTCCGTCAGTTCCACCGGGTTTTGAGTCATATACATCTTTTGCACTGAAGAGAGAAGAGAATGAGAAACACAGTGATAAAAATTTGACCAGTACCTCTACAAGTGCTTTTGAATCGCAGTCAACTCAAGTTAGATCCCTTCGACGAAGACCGTGGATTAACCATGGACAGTGTGAGAATGGTTCAGAGGAAGACTGTGATTGTGAGCGGCATGATCAAAATTTCCCCTCGAGACCCTGTCTTCCTAAAGGAGTCATTAGAGGATGTCCAGATTGCCCTAATTGCCAAAAGGTCATTGCCAAATGGCGACCAGAAGAGGCTCTTAGGCCACATCTCGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCGAGTATTCGATCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCGCAATCATGGAAACCCCCTTGTCCCCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCAAGGATTCAAAATAATTTGAAAAGGAAAAGGAGACGATGCACAAGAATGGGAGTGGATAATGGCACTGAATCAGATCCTAATGCGTTATTTTGTGAAGTTGAAAGGTTCGGGTTTGAACCTGGACCAGAGTTTACCTTGGAAACATTTAAGAGATATGCAGATGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAAGTGCTAATACAACAATTGTATGTGGTACCTCGGAGCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGTGGTTTTCCTATCAACTCTAGTCAAGTTTCTGATTCAAATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATTTAGGAATGTGCTTTTCGTCATTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGCGTCGCTGCAAAAGATGCATCCAAATTGGAAGAGGTCATGAGAAAGCATTTACCTGAACTCTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCTAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTTACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAACGTAGCTCCTGTTGACTGGCTGCGCCATGGGCATATTGCTATAGACCTGTACCGGGAGCAGAGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATTACTTTGCTTAAGAAAAACACTCTGGATAATCTAAAATGGAAAGATGTCTGTGGAAAGGATGGTCTTCTGGCAAACGCATTCAAGACACGTGTTGAGACGGAGCGAGTAAAAAGGGAATTTCTCTGCAGTTCTTCAAAAGCATTAAAAATGGAGAGTAGTTTTGATGCTACAAATGAAAGGGAATGCAGTGTCTGTTTTTTTGATTTACACCTATCTGCTGCTGCCTGTCACTGTTCCACAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGAGCTCTAAATTTTTCCTTTTTCGTTATGATATTAGTGAACTAAATGTTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAATCGGACCTTGGGCTGGCACTGACTTCTTATCTCTCACTAGATAAAAAAACAATAATTCAGGAATTGAAATTGCATTCATCCAACTCGCCCCATTCTTCCACAGGCAATGTGAATAAAGAGGTGGCTGTGCATCCATCAAATAAATTTATTGACAATGCTCAATCGGCAGATGTTCCAGTAGTGGATCGAGCAAATTTGGCTAATAGTAAGGATCTGAGCTCTCTTAAACAGAAGAAGTTAGCAGAAGCTGTGTCTCCTTTGAGTCACAAGAAAGAACTGTCAACATTTAATAGCTCTAAACCTACTCACGAAATGGCTAATCGTAAGATCCGTGTTATTAAAGAAGAATCTGTTATTTGCATATCAAAGCCGAGTGCCCCTGTTTGTGAGTTAAATCAAGAGGATTCTTCATATGCTTTATCTCCACCTTTAGCTCAACATGGAGATGAGAAAAGTTCACATTCCAAACCTAATGTTATACTTCTTAGCGACGACGAAGACGATGAAATGAAGACATCAGATTCAAATAGCAGGAAGGAGATTCCTCATATGCTTGCTGGTTCTAGAAATAAACCAAGCCCGTGTAGTGATATAGAATATAAAAGCCTGACCATTCCTGTGACAGATGCTTCTGTGACGGGTGAGAAGGATGCTACTGCAGTGCGTCGTGAAGATTCAGGTTCGAGTTCAACTAAGCTTTTGCATGTGAAACAAGAATATCACGAACAGAGAGGACCAGTTCTACCTTCAACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTACAGAACCAGTTAGAAGTATTCCAGCTTCTTCCAGAGCAGATGCCGGTGGTCATAGTTTAGAATGTTCAGATGTTCGTCCTCCGAACCCACAACATTCCGGCCCTATTAAGGCCAAGAACGAGGATAATCATGAGAAGTTTGATGGATGTTCCACTTCTAATGGAGCAGACAATGCAAGAGCTGTTATTGGAAATATCTCTTGTGGTCCAAACATTCACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTTCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAGTGAGGTCTTCATTCATATGTCAGCGACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAACATAAGCTGGGAAAAAAGGGTCTTCCTCCTTTACATCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGCTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTGGATCGAAGTCGAGTTTGCAATGAATACTGGGATTCCCGGCCATTCTCTCGGCCTCAAGGGCAGCTTTCACAAGCTGGCCAGAGCACTGTAAATGGTGGAGGCGGATATGATCAAGGGGTTCCTGCGACAATTGGAGCTGTTGCAGTAATAAAGAGTCTATTTAAAAAGGCGAATGCGGAAGAATTGAACTCATTGTACAGCATTCTTACCGACAACAAGCCAGCGGCTGAACAGATCCCAATTAAGCAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCCTAG 3735 0.4185 MRSLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKREENEKHSDKNLTSTSTSAFESQSTQVRSLRRRPWINHGQCENGSEEDCDCERHDQNFPSRPCLPKGVIRGCPDCPNCQKVIAKWRPEEALRPHLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPQSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGTKKSRIQNNLKRKRRRCTRMGVDNGTESDPNALFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPSANTTIVCGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPINSSQVSDSNEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYLGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVAAKDASKLEEVMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLRHGHIAIDLYREQRRKTSISHDKLLLGAAREAVRAQWEITLLKKNTLDNLKWKDVCGKDGLLANAFKTRVETERVKREFLCSSSKALKMESSFDATNERECSVCFFDLHLSAAACHCSTDRYACLDHAKQFCSCSWSSKFFLFRYDISELNVLVEALEGKLSAVYRWAKSDLGLALTSYLSLDKKTIIQELKLHSSNSPHSSTGNVNKEVAVHPSNKFIDNAQSADVPVVDRANLANSKDLSSLKQKKLAEAVSPLSHKKELSTFNSSKPTHEMANRKIRVIKEESVICISKPSAPVCELNQEDSSYALSPPLAQHGDEKSSHSKPNVILLSDDEDDEMKTSDSNSRKEIPHMLAGSRNKPSPCSDIEYKSLTIPVTDASVTGEKDATAVRREDSGSSSTKLLHVKQEYHEQRGPVLPSTPVDLSFHIGLTSTEPVRSIPASSRADAGGHSLECSDVRPPNPQHSGPIKAKNEDNHEKFDGCSTSNGADNARAVIGNISCGPNIHRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYISEILDAGRGSPLFMVSLENNPSEVFIHMSATKCWDMVRERVNLEIAKQHKLGKKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPFSRPQGQLSQAGQSTVNGGGGYDQGVPATIGAVAVIKSLFKKANAEELNSLYSILTDNKPAAEQIPIKQILYEEIHKTQPP 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03613 1244 Pfam C5HC2 zinc finger 598 648 IPR004198 -
Trre1g03613 1244 MobiDBLite consensus disorder prediction 815 844 - -
Trre1g03613 1244 MobiDBLite consensus disorder prediction 806 859 - -
Trre1g03613 1244 Gene3D Cupin 120 492 - -
Trre1g03613 1244 MobiDBLite consensus disorder prediction 935 972 - -
Trre1g03613 1244 FunFam Putative lysine-specific demethylase JMJ16 1018 1156 - -
Trre1g03613 1244 ProSiteProfiles JmjN domain profile. 135 176 IPR003349 -
Trre1g03613 1244 ProSiteProfiles FYR domain FYRC motif profile. 1072 1162 IPR003889 GO:0005634
Trre1g03613 1244 MobiDBLite consensus disorder prediction 35 61 - -
Trre1g03613 1244 Pfam F/Y rich C-terminus 1075 1158 IPR003889 GO:0005634
Trre1g03613 1244 ProSiteProfiles JmjC domain profile. 345 508 IPR003347 -
Trre1g03613 1244 SUPERFAMILY Clavaminate synthase-like 253 535 - -
Trre1g03613 1244 PANTHER LYSINE-SPECIFIC DEMETHYLASE 130 1118 - -
Trre1g03613 1244 SMART fyrc_3 1076 1170 IPR003889 GO:0005634
Trre1g03613 1244 Pfam JmjC domain, hydroxylase 375 491 IPR003347 -
Trre1g03613 1244 Gene3D - 1019 1156 - -
Trre1g03613 1244 SMART cupin_9 345 508 IPR003347 -
Trre1g03613 1244 Pfam jmjN domain 136 169 IPR003349 -
Trre1g03613 1244 ProSiteProfiles FYR domain FYRN motif profile. 1012 1070 IPR003888 GO:0005634
Trre1g03613 1244 SMART JmjN_1 134 175 IPR003349 -
Trre1g03613 1244 SMART fyrn_3 1026 1070 IPR003888 GO:0005634
Trre1g03613 1244 Pfam F/Y-rich N-terminus 1025 1067 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03613 Trre-Chr1 33863282 33871892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03613 5 1239 JUMONJI Transcription Factor Family AT1G08620 54.008 0.0 1222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g03613 JmjC 4.8e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03613 K11446 - gmx:100800271 1917.51