Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03611 ATGGCTGGAAACAATGATGCAGGGAAATCCAACACACGAAAGAGAAAAATCGGCGAAATCAAGAACGTGGAAAAGTCGAACAAGTGTGATGCGATGTTTTCAAAAGGCAAAATTGGCCTCTTCAACAAAGTAACAGAGCTCTCTATTCTATGCAAAGCAAAAACCGCACTCATCATCGCATCACCCAACAAGGAACTTCATGCATGCGGCTATCCTAATTGTGATGCTGTCATTCAACAATTTTTGACCGGAAAAGACAGCGTGGACGACAGTGAGAAAAAGAAGCAAGAGGAGGTTGTGGAAACCCTAAGACTTGAATATCAAGCAATTGAAGATAAACTTACGGAAGAAGAGAAGAATTTGAAAGCTATTATTGATGTGAAAAGTAAGAGTAATTCCATTTTTCCTGTTTGGTGGGGTGATTCTATTGATGATATGGATTTAGCATCTCTTGAGGAATTTAAGTCTTCTTTACAAAATTTGAAACTTAATTTAGGTTCGGCCATTGACGAAAAGAAATTTTCTTCCAATTTAAGCCATTGTTAA 546 0.3773 MAGNNDAGKSNTRKRKIGEIKNVEKSNKCDAMFSKGKIGLFNKVTELSILCKAKTALIIASPNKELHACGYPNCDAVIQQFLTGKDSVDDSEKKKQEEVVETLRLEYQAIEDKLTEEEKNLKAIIDVKSKSNSIFPVWWGDSIDDMDLASLEEFKSSLQNLKLNLGSAIDEKKFSSNLSHC 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03611 181 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre1g03611 181 SUPERFAMILY SRF-like 15 82 IPR036879 GO:0003677|GO:0046983
Trre1g03611 181 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre1g03611 181 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre1g03611 181 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre1g03611 181 Coils Coil 151 171 - -
Trre1g03611 181 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre1g03611 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 68 IPR002100 GO:0003677|GO:0046983
Trre1g03611 181 Coils Coil 93 127 - -
Trre1g03611 181 Gene3D - 26 109 IPR036879 GO:0003677|GO:0046983
Trre1g03611 181 PANTHER MADS BOX PROTEIN 15 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03611 Trre-Chr1 33849707 33850252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03611 14 162 Type I MADS-box Gene Family AT5G60440 29.032 2.19e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g03611 SRF-TF 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03611 - - tpra:123896833 219.55