Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03604 ATGGCCGGAAACAACAATGCAGCACAATCCAACACACGGAAGAGAAAAATTGGTGAAATCAAGAAAGCAAAAAATCCGAACAACTCTGACATGATGTTTTCAAAATGCAAAATCGGTCTTTTCAACAAAGTAATAGAGCTCTCTGTTTTGTGCAACGCAAAAACTGCACTCATCGTCACATCACCTGATGAGAAACTATATGCATGTGGCTATCCTAATTGCGACGCCGTCATTCAACAATTTTTGACCGGAAAAGACACACCATGA 267 0.4007 MAGNNNAAQSNTRKRKIGEIKKAKNPNNSDMMFSKCKIGLFNKVIELSVLCNAKTALIVTSPDEKLYACGYPNCDAVIQQFLTGKDTP 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03604 88 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre1g03604 88 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g03604 88 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre1g03604 88 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre1g03604 88 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre1g03604 88 Gene3D - 25 87 IPR036879 GO:0003677|GO:0046983
Trre1g03604 88 PANTHER MADS BOX PROTEIN 15 82 - -
Trre1g03604 88 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 68 IPR002100 GO:0003677|GO:0046983
Trre1g03604 88 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
Trre1g03604 88 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03604 Trre-Chr1 33815818 33816084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03604 12 88 Type I MADS-box Gene Family AT5G60440 40.260 9.35e-14 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g03604 SRF-TF 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03604 - K09264 tpra:123896833 103.605