Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03601 ATGGCTGGAAACAACAATGCTGCCAAATCCAACACACGAAAGCGAAAAATTCCTGAAATCGAGAAAGTGGAAAAGTCGAACAAGTGTGATGCGATGTTTTCACAACGCAAAATTGGTCTCTTCAACAAAGTAACAGAGCTCTCTATTCTATGCAAAGCAAAAACCGCACTTATCATCGCATCACCCAACAAGGAACTTCATGCATGTGGCTATCCTAATTGTGATGCTGTCATTCAGCAATTTTTGACTGGAAAAGACAGCGTGGACGACAGTGAGAAAAAGAAGCAAGAGGAGGTTGTGGAAACCCTAAGACTTGAATATGAAGCAATTGAAGATAAACTTACGGAAGAAGAGAAGAATTTGAAAGCTATCGTTGATGCGAAAAGTAAGAGTAATTCTATTTTTCCTTGTTGGTGGGGTGATTCTATTGATGATATGGATTTAGAATCTCTCGAAGAATTTACAACTTCTTTACAAAATTTGAGACTTAATTTAAGTTCAGCCATTGATCAAAAGAAGTTAATGACCAATTTAAGCCATTGTCAAATTTAA 552 0.3696 MAGNNNAAKSNTRKRKIPEIEKVEKSNKCDAMFSQRKIGLFNKVTELSILCKAKTALIIASPNKELHACGYPNCDAVIQQFLTGKDSVDDSEKKKQEEVVETLRLEYEAIEDKLTEEEKNLKAIVDAKSKSNSIFPCWWGDSIDDMDLESLEEFTTSLQNLRLNLSSAIDQKKLMTNLSHCQI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03601 183 Gene3D - 26 108 IPR036879 GO:0003677|GO:0046983
Trre1g03601 183 Coils Coil 151 171 - -
Trre1g03601 183 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre1g03601 183 SMART madsneu2 12 72 IPR002100 GO:0003677|GO:0046983
Trre1g03601 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Trre1g03601 183 PANTHER MADS BOX PROTEIN 15 165 - -
Trre1g03601 183 SUPERFAMILY SRF-like 15 82 IPR036879 GO:0003677|GO:0046983
Trre1g03601 183 Coils Coil 93 127 - -
Trre1g03601 183 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre1g03601 183 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre1g03601 183 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03601 Trre-Chr1 33799863 33800414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03601 12 162 Type I MADS-box Gene Family AT5G60440 26.752 2.10e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g03601 SRF-TF 5.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03601 - - tpra:123896833 223.016