Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03584 ATGAAAGGGCGATCGAATCGCCCTCAGAGTTTTGACCCTCCGCCGGACGAATGGGTCGATGGTTCATGGACGGTGGACTGCATCTGCGGCGTCACGTTCGACGACGGCGAAGAGATGGTAAAGTGTGATGAATGCGATGTTTGGGTTCATACGCGTTGTTCTCGTTATGTGAAAGGTGATGACATGTTTGCTTGTGACAAGTGCAAGAATAAGAACAACCGTGGCGGAATGGAAAATAATACGGAGGAAACTGAGGTTGCACGGTTGCTTGTTGAGCTTCCGACGAAGACGATTTCGTTAGAGAGAAGGAATAATAATAATAGAAGTAATTCTCTTTCGTCTGCGAGAGCGGCGTCTTGTTCGCGTCGTCCTTTTAAGTTATGGACTGATATACCTATGGAGGAGAGGGTTCATGTTCAGGGTATTCCTGGTGGTGATCCTTCTTTGTTCGCTGGAAAGGCTGTGTCTTCGATTTTTGGTCCGCAGTTGTGGAAATGTACTGGTTATGTTCCGAAGAAGTTTAGTTTTCAGTATAGGGAATTTCCGTCTTGGTATGAGAATGATGATAAGGGTGCACAAGAGAATGATAATGATATCAAGGATAAGGACAATGGTGCTGGGGTACTTTTATCGTTATCGAAAGAGACTAATAATGTGTTGGCTACGTCTCCTGTTGCGGCTTTGGTTGATATGAGATCAGGTCAGGGTAGGAAGGGTTTAGAGGAGAGTGGAACGGGCAAGTTTGGCAAAGATCATATGCCACGTGTCCATAATGCAGTTAAGAAGGAGAGGACTTTGATTAGGCCTTTTGTTCAGTCGAGTAAGCGTAGGAAAGACGAATTCTCCAAAGACCGGAGTGGAAAGAAGAAGCGGGTTAAGACTTCTGACAGAGAGGAGGTAGATCTCAAGAGGAGGACTTCTGATAGAGAGGATGTTGATCCCAAGAGGAGGACTTCTGATCGAGAGGATGTAGATCCCAAGAGGAGGACTTCTGATCGGGAGGATGTAGATCCCAAGAGGAGGACTTCTGATCGAGAGGATGTAGATCCCAAGAGGAGGACCTCACATTCTTCTAAAGCAGTATTTACACCCACCAGTGATGCAAAACAATTGGCATTTTATGGAGACAGAGGTCCGAAGGTTTTCAAGGATGGCATTCGGAGCATAAAGAATAAAAACTTAAAAGACACAGTGGTTCGAGATCATATTTCCAATGATTCTTTTGCTGTTGGTACCATCATGGAAGTATCAAATAACAATTTGACAACTACCGAGGAGTCTTCAGAAGCTTTATATCCTAAGAAATCAAGACGTAGTCATTCTGCTGGAGATGTATTAGCAGAAGAGAAGACTGGCCATAAAGTTTTGGAGATGTCTTCTAAGACTGATGATGCTGTTACATCAGTTCTAAAGCATACTTATCTTGAAAATGCTTCAGCTAAAAAGAAGGGTGGAGATTGCTTGGAAGCTAATAATGTGGATGATACTTTAGTAGTAAGAAGCCCTGTGAGTCCTCAGACAGAAGATCACTGTGGTTCTGCACCAGAACATATGGCAAAGCAAATTTCTCAAGATATTGACTGTAACCAGCATCCAAGCTCTGGACAATGCAAAGTTAAGGTGAAGATAGGTGAAGATGACGGTGATAAGTTTAAGCTCTCAGATTTTCATTCTTCTCCTATCAATGATCTTAAAAGCAATGGACAGTCATCTGATCCCACATCTGATATTGATAAAGTGAATGATGCTGCAGTTCTCAGTTTACCTTTATGTGAAAGTAAGGCGGTCAATGTTGGTATACCACCAGTAGTAGTCCCTGATAATCATACCACTGAACTCAATGAATTACCTGGTAATTTTTCTGTTGGAAAAGTAGAGGGTTCTGAAGGTTCCTTGGAAACACACAAGAGATTTTCAGAATCAAAAGATGGTTCGGACTCTGCTAAGAATGCATCAAAATCTGAAGCACTTGAATGCCCAAGTAAAATGCTAGTTTCTGTTGGGAAGTTGTCTCCAACTTCATCAACCATGAACTCCAAATCATTGAGTCACGACTTCAAATCTGAAGAAGCTGAAATCGCTAATCCATTTACAAAGCATGGAGCTAAAGCAGATCGTAGCATTCACTTAAAGAGTGAAAGTTGTAAGAATGATACTGCAATGGATGAAGTTCCAAGGAAGTATGTAAGAGAACGTCCAAAATCCTCTTTGAATTCCAATTCAAAAGGATTACATTCTAGCAGGAGCGCACAGAATTCCATTTCAAAGCAAGTAAATCCAGATGTGAGAGATTCTGTTCATTGTTCATCATCGAAACCATCCCCGGGTCATCAGATTCCAAGTGTTTTTGGTTCTAGTGAGACTAATGCATCGATGCACCATAAAAAAGAATCACAAGTGCAGAATAAGATTTCTTCTACTGTGCCACCGAAAGTAGAAAAGCTTAATCAAACAAACAGCCATCCTTCCTCGAAGTTGAACCAGAGCCACACACCATCATTGAATCCTTCTCCAACATTAAATTCTTCAATGCTGAGTGATGAAGAGCTAGCTTTGCTCTTGCATCAAGAACTGAATAGTTCACCTCGTGTACCCCGGGTACCCCGTGCACGTCACACGGGTAGCTTGCCACAGTTGACTTCTACCAGTGCTACAAACATGCTTATGAAGCGAGCAGCAGTTGGAGGAAAGGATAACCATTTGGTATCTAAAAGAAAATACAAGGATGCAACTAGAGATGGGTTTTGCAGTTCTCGTGACCATGAAGATGAAACTAAAAGGATAGAGAAAGAGAAGGGTCAATCGTCATCTGATCAGAGAAAACAAGACATGGCACATGTGGAAGATGCTTCTGTAAAGGAAGAAGGAGGCAGTGCATGTGCGACAGCTACAAATTCTATTACAAGTAATATTGTTTCCACAACCTCTGCCATCGCAAACGGCAGTTCACCTTCCCCTCGTGAGGATCGTAATTTGTCATCAATGAAGAACTCACCCAGGAATATATCTGATGATGATACAGCAATTGCTGGAAGGCCAGTTCATCACACCTTACCTGGCTTAATCAGTGATATAATGAGCAAGGGCAAGCGCATGACATATGAGGAACTCTGTAATGTTGTTGAACCGCACTGGCCTAACTTGAGGAAACATAACGGGGAGCGATATGCATATGCAAGTCATTCCCAAGCTGTTCTTGATTGTTTGAGGAACCGACATGAATGGGCGAGGTTGGTTGACCGCGGTCCAAAGACAAATACTAATAGGAAAAGGCGTAGTAAGCTGGACACTGAAGAATCTGATGATGACAATGGATATGAAAAAGGAAAAGCTGCAAAAGAGACCGATGGGAAGAACTTTGAGTTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGGAGGCGGCTGGCTCTTCAGGGAAGAGCAGTAAAGGACGTCAGGAGGAGACAAAAAGCCGACTCACTAACCGGCGAGGATGTTGGTACATTATCCAATACTAGTGACGAGAGCATGTTTAGTGAGGATGAAGTTCAAGTTGACAGAGTACGTCCAGCAGGAAGTACATCAGACGAGGCGGGGAGTGCTTAA 3600 0.4297 MKGRSNRPQSFDPPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKNKNNRGGMENNTEETEVARLLVELPTKTISLERRNNNNRSNSLSSARAASCSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGKAVSSIFGPQLWKCTGYVPKKFSFQYREFPSWYENDDKGAQENDNDIKDKDNGAGVLLSLSKETNNVLATSPVAALVDMRSGQGRKGLEESGTGKFGKDHMPRVHNAVKKERTLIRPFVQSSKRRKDEFSKDRSGKKKRVKTSDREEVDLKRRTSDREDVDPKRRTSDREDVDPKRRTSDREDVDPKRRTSDREDVDPKRRTSHSSKAVFTPTSDAKQLAFYGDRGPKVFKDGIRSIKNKNLKDTVVRDHISNDSFAVGTIMEVSNNNLTTTEESSEALYPKKSRRSHSAGDVLAEEKTGHKVLEMSSKTDDAVTSVLKHTYLENASAKKKGGDCLEANNVDDTLVVRSPVSPQTEDHCGSAPEHMAKQISQDIDCNQHPSSGQCKVKVKIGEDDGDKFKLSDFHSSPINDLKSNGQSSDPTSDIDKVNDAAVLSLPLCESKAVNVGIPPVVVPDNHTTELNELPGNFSVGKVEGSEGSLETHKRFSESKDGSDSAKNASKSEALECPSKMLVSVGKLSPTSSTMNSKSLSHDFKSEEAEIANPFTKHGAKADRSIHLKSESCKNDTAMDEVPRKYVRERPKSSLNSNSKGLHSSRSAQNSISKQVNPDVRDSVHCSSSKPSPGHQIPSVFGSSETNASMHHKKESQVQNKISSTVPPKVEKLNQTNSHPSSKLNQSHTPSLNPSPTLNSSMLSDEELALLLHQELNSSPRVPRVPRARHTGSLPQLTSTSATNMLMKRAAVGGKDNHLVSKRKYKDATRDGFCSSRDHEDETKRIEKEKGQSSSDQRKQDMAHVEDASVKEEGGSACATATNSITSNIVSTTSAIANGSSPSPREDRNLSSMKNSPRNISDDDTAIAGRPVHHTLPGLISDIMSKGKRMTYEELCNVVEPHWPNLRKHNGERYAYASHSQAVLDCLRNRHEWARLVDRGPKTNTNRKRRSKLDTEESDDDNGYEKGKAAKETDGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKADSLTGEDVGTLSNTSDESMFSEDEVQVDRVRPAGSTSDEAGSA 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03584 1199 MobiDBLite consensus disorder prediction 1080 1129 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 1161 1176 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 1143 1159 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 975 1004 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 801 842 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 232 363 - -
Trre1g03584 1199 PANTHER UNCHARACTERIZED 1 1191 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 243 356 - -
Trre1g03584 1199 SMART PHD_3 26 69 IPR001965 -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 908 953 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 702 733 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 629 649 - -
Trre1g03584 1199 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 908 958 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 615 656 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 1080 1199 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 734 789 - -
Trre1g03584 1199 SUPERFAMILY FYVE/PHD zinc finger 16 73 IPR011011 -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 697 842 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 430 444 - -
Trre1g03584 1199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 76 IPR013083 -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 975 1011 - -
Trre1g03584 1199 MobiDBLite consensus disorder prediction 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03584 Trre-Chr1 33560309 33567651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03584 25 68 PHD Transcription Factor Family AT5G22260 44.681 7.39e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03584 - - gmx:100810855 1398.26