Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03566 ATGGGTTCGGGAAGCAGAAACTACTCTGCAAATCCGAACGATTACAAGCTTCTAGAAGAAGTCGGTTACGGTGCAAGCGCAACGGTTTATCACGCAATCTACATCCCTTACAACGAAGAAGTTGCAGTGAAATCTCTCGATCTAGATCGATGCAATTCAAATTTCGACGATATACGAAAAGAAGCACAGATCATGAGCTTAATTGATCACCGTAACGTTGTTAAATCGTATTGTTCATTCGTTGTGGATCGTAAACTTTGGGTGATTATGCCTTTTATGGCTCAGGGTTCATGTTTGCATCTAATGAAAACTGCTTATCCCGATGGATTTGAAGAAGATGCTATTGGATCGATTCTCAAAGAAACTCTTAAAGCTTTGGATTATTTACATCAACATGGTCACATTCATCGTGATGTTAAAGCTGGTAATATTTTGCTTGATTCTAATGGTGAAGTCAAACTATCTGACTTTGGTGTTTCTGCTTCTATGTTTGATACTGGTGATCGTCAGCGTTCTAGAAATACTTTTGTTGGTACTCCTTGCTGGATGGCGCCGGAGGTGCTGCAACCTGGTACTGGTTATAATTTCAAGGCTGATATCTGGTCTTTTGGAATTACTGCACTTGAGTTGGCTCATGGTCATGCGCCGTTTTCTAAGTATCCTCCAATGAAGGTTTTACTCATGACCATACAAAATGCACCTCCTGGCCTCGATTATGATCGTGATAGAAAGTTCTCGAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCGTCTGTGGACAAGTTACTGAAACACTCCTTCTTCAAGCAAGCTAAGCCTCCGGAACTTTCTGTGAAGAAATTATTTGCTGACCTACCGCCTCTTTGGACTCGTGTAAAAGCCCTGCAGCTTAAAGATGCAGCTCAACTAGCACTGAAGCGAATGCCTTCTGCAGAACAAGAAGCAATATCTCAGAGTGAATATAAGCGAGGAGTTAGTGCATGGAACTTTGACGTTGATGATTTGAAAGCTCAAGCTTCATTGGTGCAGGACGATGATGATATTGCAGAGATAAAGGAAGAAGAAGAAAATAAGTTCTTCAGCTCCAGCAGGGATACAAGTGATTCCCAGCTTAATGTGGAGAAGAGGAATTCAGATAACTCGCAACAAGTTGAGTTCATGTTACAAGTAGGTGACAATGATGTACCACAGAGTGATAAAAGAAATGGATCAATTGCTGAGGCAACAACATCTACTTCAGAGAAGGACGTGGGAACAAGCAAGACTAAAACTCAGGCAGTCAAAGTTGGTACAACCCAAAGTGGGCCGCTGGTGCCTGGCACAGTGCTCGGTCATTATTTACCCGAAAGAGGGCGTCTATTTGAAAGGTTTGAGAATGAAAGTCAGTTATCAGGTGAGAAAAGCAATCGGGATATGCGACGAGCTCCAAGCTTTAGTGGTCCATTGATGCTTCCTAATCGAGCGTCGGCAAATAGTTTGTCGGCCCCGATAAAATCCTCTGGAGGATTCAGAGATTCCTCAGATGATAAATCCAAGGCTAATCTAGTGCAAATTAAAGGGCGGTTCTCAGTGACATCAGAAAATTTAGATCTGGTGAAGGATATTCCTGTAAGTTCTGTTTCACGCCGATCTCCACAGGATTCTTCATCACTGAGGAAATCTGCCAGTGTTGGTGATTGGATGTTGGATTTCAAACAACAAATGCCAATTGGACAGTCTTCCAATGATCTTGCCAACATGAATATTCCTACATCGGTTATTGTGCCTCACCTTCACAATCTTTTCCAGCAGACATCTATTCAACAGGATCTTATAATGAGTCTGTTGAGTAGCTTGCAAACTGCTGATGCAAATGATGCTTCTCAGAATGGAAAGATGCCACCAATACCTCGCAGTCCAGAGAATAATGGCAGTGTTGATACTACAGCTTCGGAGAGAGAACTACTTCTGCTGTCCAAAATTTCAGAACTTCAGTCTCGGATGATCAGTTTGACAGATGAACTTACTTCTGAGAAGTTGAAACACATGCAGTTGCAACAACAAGTAGCCGCATACTCCAGCCAGCAACAAAATGGGGAAAGAGAGGAAGGTGCATGA 2121 0.4234 MGSGSRNYSANPNDYKLLEEVGYGASATVYHAIYIPYNEEVAVKSLDLDRCNSNFDDIRKEAQIMSLIDHRNVVKSYCSFVVDRKLWVIMPFMAQGSCLHLMKTAYPDGFEEDAIGSILKETLKALDYLHQHGHIHRDVKAGNILLDSNGEVKLSDFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDRKFSKSFKEMVAMCLVKDQTKRPSVDKLLKHSFFKQAKPPELSVKKLFADLPPLWTRVKALQLKDAAQLALKRMPSAEQEAISQSEYKRGVSAWNFDVDDLKAQASLVQDDDDIAEIKEEEENKFFSSSRDTSDSQLNVEKRNSDNSQQVEFMLQVGDNDVPQSDKRNGSIAEATTSTSEKDVGTSKTKTQAVKVGTTQSGPLVPGTVLGHYLPERGRLFERFENESQLSGEKSNRDMRRAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSSDDKSKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSPQDSSSLRKSASVGDWMLDFKQQMPIGQSSNDLANMNIPTSVIVPHLHNLFQQTSIQQDLIMSLLSSLQTADANDASQNGKMPPIPRSPENNGSVDTTASERELLLLSKISELQSRMISLTDELTSEKLKHMQLQQQVAAYSSQQQNGEREEGA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03566 706 MobiDBLite consensus disorder prediction 403 441 - -
Trre1g03566 706 MobiDBLite consensus disorder prediction 687 706 - -
Trre1g03566 706 MobiDBLite consensus disorder prediction 371 396 - -
Trre1g03566 706 Gene3D Transferase(Phosphotransferase) domain 1 96 324 - -
Trre1g03566 706 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 680 IPR047173 GO:0043539
Trre1g03566 706 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre1g03566 706 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Trre1g03566 706 CDD STKc_OSR1_SPAK 13 276 - -
Trre1g03566 706 FunFam Serine/threonine-protein kinase BLUS1 4 92 - -
Trre1g03566 706 ProSiteProfiles Protein kinase domain profile. 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03566 706 SMART serkin_6 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03566 706 MobiDBLite consensus disorder prediction 364 441 - -
Trre1g03566 706 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 96 326 - -
Trre1g03566 706 MobiDBLite consensus disorder prediction 625 649 - -
Trre1g03566 706 SUPERFAMILY Protein kinase-like (PK-like) 12 326 IPR011009 -
Trre1g03566 706 Pfam Protein kinase domain 15 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03566 Trre-Chr1 33263874 33271385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03566 8 698 MAP Kinase Kinase Kinase Kinase AT4G10730 65.014 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trre1g03566 Pkinase 1.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03566 - - gmx:100783699 1135.17