Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03561 ATGGAAGCATCCCATGAACAACTAGAACTCTCTTTAGGCTCAAGGGAACACACCAATAATATCATCAAAGGGAAAGGAAGTAAATTGGTTATTAGAGGAACAGGAGTAAGAACATGTTTCAATGTGTATGAATGCAAAACATGTAACAAAGTTTTCTCTAAATTTCAAGCACTTGGTGGCCATACAACAAGTCACAAGAAGTCTAGGGCATTGGAAATTGCTCAAGATGATGGCAACAACAACAGCACCAACAAAAAACACAAGCTTCATGGGTGCTCCATTTGTGGATTTGCATACACAACTGGACAAGCCCTTGGTGGACATATGACACGCCACCGTGCACCAGTTGGGATCGCAACCTCCTCGAAACCAAAGGCTCTGAAACCTTATAAACCTAGAAAGAAAAGGAATGTCTTGCCTTTAGATTTTGATCTCAACCTTGCAGCTGCGCCTGAAGATGAGCAAAGAAAATCCAAGTTTGCCTTACAAACTAACAAGTCTTGTCTTCTCTGCATCAGCTTAGATGCACTTTCATTACCGTAA 543 0.4125 MEASHEQLELSLGSREHTNNIIKGKGSKLVIRGTGVRTCFNVYECKTCNKVFSKFQALGGHTTSHKKSRALEIAQDDGNNNSTNKKHKLHGCSICGFAYTTGQALGGHMTRHRAPVGIATSSKPKALKPYKPRKKRNVLPLDFDLNLAAAPEDEQRKSKFALQTNKSCLLCISLDALSLP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03561 180 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trre1g03561 180 SUPERFAMILY beta-beta-alpha zinc fingers 42 112 IPR036236 -
Trre1g03561 180 PANTHER ZINC FINGER PROTEIN ZAT5 36 161 - -
Trre1g03561 180 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Trre1g03561 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Trre1g03561 180 Pfam C2H2-type zinc finger 42 67 - -
Trre1g03561 180 Pfam C2H2-type zinc finger 90 115 - -
Trre1g03561 180 SMART c2h2final6 90 112 IPR013087 -
Trre1g03561 180 SMART c2h2final6 43 65 IPR013087 -
Trre1g03561 180 Gene3D Classic Zinc Finger 40 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03561 Trre-Chr1 32920221 32920763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03561 38 160 C2H2 Transcription Factor Family AT2G28200 40.719 2.97e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g03561 zf-C2H2_6 3.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03561 - - tpra:123889127 269.24