Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03558 ATGCCAGATTCTCCTCAAAGAAATTCAGCTTTGAAGATTGGAAGAGGGAAGATTGAGATCAAGCGAATCGAAAACACAACAAATCGTCAAGTTACTTTTTGTAAGCGTCGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTAATAGTCTTCTTGACTCGCGGCCGTCTCTACGAATATGCAAATAACAGGTGTAAGCATGAGGGTGTTATGCTTAATTGTAGTGTTGATTGA 261 0.3946 MPDSPQRNSALKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFLTRGRLYEYANNRCKHEGVMLNCSVD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03558 86 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 74 - -
Trre1g03558 86 SUPERFAMILY SRF-like 14 75 IPR036879 GO:0003677|GO:0046983
Trre1g03558 86 ProSitePatterns MADS-box domain signature. 15 69 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 CDD MADS_MEF2_like 14 75 IPR033896 GO:0000977|GO:0045944
Trre1g03558 86 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Trre1g03558 86 Gene3D - 25 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03558 Trre-Chr1 32849617 32851255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03558 9 75 MADS-box Gene Family AT2G42830 88.060 4.51e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g03558 SRF-TF 8.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03558 K09264 - twl:120014444 124.405