Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03552 ATGGCAATGGCGATGACAATGCCTTTTAGTTTAAGGAACAAGCTTAAGACTCTTTGTGCTTATGGTGATGGTTGGTCTTATGCCATTTTTTGGCGTTTTCATGAGAAGAATCCTATGTTGTTGAATGTGAAAGAAGCATACTATGAAGATCCATTAGGAGAAGTGATTCATAACATGATTCCACAAGTGCATTTGTTGGGTGAAGGAATTGTTGGTGAAGCTGCTTTCACAAACAAACACAGTTGGTTGCATTCAGTTAGTTGTGAGGTTGATTCTGGATTGTATCAACAATTCTCTTCTGGGATAATAAAGACCATTGTGGTTATACCTGTCAAAGCATGTGGAGTGGTACAGTTTGGATCCAGAAATAAGATTTTCGAGACAATGGATTTTTTGGATCGAACACAAAGTTTGCTCAAGGATACAGAAGATATCGACTGGATTGAATTGTCAGGAAATGACTTTTTTCCAATGGATTTTACAAATGATGATCTTAATGGATTGTTAGCTTCCATTTCCTCTGAAAATTCATGTGATTGGAATCTCAAATATGCGCACGATGAAAATCATAATGATCTGAGAGAAGTTTTTTCTTCTTGTGAAGAAAGGAGCCTAACTCTTAGTGACCAATTTAAATGTACCATAGAAGCTTTTATGGAGCCTAACTCTTCTATGGACAACTTGATTTCCCAAAATACCCCTCTTTTTGCATCTGAAACATTGGCACAAGAAGTTAGCACTTCATTTGCTAGCAGCGTTGTTCATGATTCATCGTTGACCTCATTGCAAAATTCAATGGATAATAATGTTGTGACAGAAGTTCATTTCCCGGCAAGTTCAGGTACACTCGATGGAATCTCTAGTCGCTTAGAGCCGATTGATATGTCAGAAGAAATTTTGAAGTTCAGCTCAATGGATGATTTTTCTCAATGGTTTGCTCCTTCACCAGAAGCTACCGGTAACTGTAGAACAATGATTCAATTGGATAATAATGTTTCTGAACCAATAGAATTTAATCCTACTTGTTCTGATCTAGGCCTAGCCGAGAAAGAAACATCGGTAGTAATACATAGTTCCGAGAATGATTTCTTGGATAACATGGAATTCGATTTGGGATGTGATCAAGGTAGTGAATGGTTGGTGAATTTACTTACACCAATGGTGAGTGCGGCTACTGATAATACCGGCTTTTCTGAATGCATATCAGAGTTGAATACTAGTCCACCGACCGATAATACTCGGAAGAGGTTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGAGGTGAAACAAATTACATCAATCCTTTTAATAGTTCTAGTTTTGAAAATGAGTTATCATCATCGTCAAATAAGAAGCATATGGTGGAATTTTCACATATGAATAGAACTTCATTGCATTTCGGAAACGTTGAAGGAGTCGAAACTAGAGCAAACTTGATGCATTCTGTTTCTGAATTGGACAAGTCCAATAGTGTTTTAGCTATGTTTGTTAATGATCGAAATAGCATCAATATCAAGAGTGCTGTTCCGGTACAGCCTAGAAGATCAGAAGAGCCCATGAAACATACAAAGAAGAAGGCTAAACCGGGGGAGAGTACTCGACCGCGACCAAAAGATCGGCAGCAGATCCAAGATTGTATTAAAGAGTTGAGAGGAATCATCCCTCATGGCGGAAAGTGTAGCATTGATTCTTTGTTAGACCGTACGATCAGATACATGCTTTTCTTACGCGGCATCATTAAATATGCAGACATACTACAAGAGCCGAATGAGCCTAAGCTTATTGACCAAGAAAATGAAGCGATTCTAAAAGACAAAAACCATGGTGCTACATGGGCATTTGAAGTAGCAAACCAAACAATGGTATGTCCAATTATAGTCGAAGATATGAATCCCCCTGGCCAAATGCTTATAGAGATGCTTTGTGGGGATCAAGGTTTCTTCCTTGAGATAGTTGACATAATTCGAGGTTTCGGGCTTAATATTTTGAAAGCAAAGATGGACTTAAAGAAGAATAAACTATGGGCGCGTTTTATAGCTGAGGCGAATAGACCTGTGACAAGGATAGATGTGTTTTGGTCACTTATCCATCTTCTACAACAACCAAACGCTGCCGGAATTGATTCTTCTGATAAGCATGGAAATATCATTCCTTCCAACACCGCTTAA 2172 0.3835 MAMAMTMPFSLRNKLKTLCAYGDGWSYAIFWRFHEKNPMLLNVKEAYYEDPLGEVIHNMIPQVHLLGEGIVGEAAFTNKHSWLHSVSCEVDSGLYQQFSSGIIKTIVVIPVKACGVVQFGSRNKIFETMDFLDRTQSLLKDTEDIDWIELSGNDFFPMDFTNDDLNGLLASISSENSCDWNLKYAHDENHNDLREVFSSCEERSLTLSDQFKCTIEAFMEPNSSMDNLISQNTPLFASETLAQEVSTSFASSVVHDSSLTSLQNSMDNNVVTEVHFPASSGTLDGISSRLEPIDMSEEILKFSSMDDFSQWFAPSPEATGNCRTMIQLDNNVSEPIEFNPTCSDLGLAEKETSVVIHSSENDFLDNMEFDLGCDQGSEWLVNLLTPMVSAATDNTGFSECISELNTSPPTDNTRKRLFSELGIEELLRGETNYINPFNSSSFENELSSSSNKKHMVEFSHMNRTSLHFGNVEGVETRANLMHSVSELDKSNSVLAMFVNDRNSINIKSAVPVQPRRSEEPMKHTKKKAKPGESTRPRPKDRQQIQDCIKELRGIIPHGGKCSIDSLLDRTIRYMLFLRGIIKYADILQEPNEPKLIDQENEAILKDKNHGATWAFEVANQTMVCPIIVEDMNPPGQMLIEMLCGDQGFFLEIVDIIRGFGLNILKAKMDLKKNKLWARFIAEANRPVTRIDVFWSLIHLLQQPNAAGIDSSDKHGNIIPSNTA 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03552 723 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 7 714 IPR043561 GO:0003700|GO:0006355
Trre1g03552 723 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 528 577 IPR011598 GO:0046983
Trre1g03552 723 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 58 138 IPR025610 -
Trre1g03552 723 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 541 583 IPR036638 GO:0046983
Trre1g03552 723 MobiDBLite consensus disorder prediction 516 541 - -
Trre1g03552 723 MobiDBLite consensus disorder prediction 509 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03552 Trre-Chr1 32728036 32732094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03552 525 710 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.226 1.61e-60 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03552 - - cam:101509177 965.296