Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03550 ATGAATACAGCTCAGTGGCCTCAGGAAATTGTGGTAAAACCAATAGTAACAACAAATCATCATGTGTTGGAAAAAAAGCCAAAGCCACAAAAAGAACAAGCTATAAACTGTCCAAGGTGTAATTCAATAAACACAAAATTTTGTTACTACAACAATTATAGCTTAACACAACCAAGATATTTCTGCAAAACATGTAGAAGATATTGGACTCAAGGTGGATCTATTAGAAACATTCCTGTTGGTGGTGGTTCAAGAAAAAACAAAAGATCTTCCACTTCAAATTCTTCAATTTCAACAAAAAACCTACATGCTCATGATCTTGTTGGTGTTAGTGTTACACCACAAAATAAGATCCATCATGAAGATCAAGGACAAGATCTAAATTTATCTTTTCCTTCAATAACACTAAGATCTAGTGGTGGTGGTAGCATCTCTCATGAATTGGTTCAACAAAATAGTATCAACACTTGTGATCATTTTTCAGCATTGGAGCTTCTTAATGGGATAACTACTTCAAGGGGTTTACAACTTCCTTTTATGCCTGTTCAACTTCAAGGTGGATTTCCTCTACAAGATTATAAGCAATTGCCAATGAGTTTTTGTTTAGATGGAATTAATGGAGGAAGTGGATTTGCAAGTGTTGATCATGGAAAAGTTTTGTTTCCTTTTGAGGATTTAAAACAAGTTTCTAGTACTACTAATAACACAACATTGGATTTGGATCAACAAGGTTATTCAAGTGGAATTTGGACTGGAATGATGGGAGGAGGTGGAGGAGGATCATGGTAG 789 0.3498 MNTAQWPQEIVVKPIVTTNHHVLEKKPKPQKEQAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNKRSSTSNSSISTKNLHAHDLVGVSVTPQNKIHHEDQGQDLNLSFPSITLRSSGGGSISHELVQQNSINTCDHFSALELLNGITTSRGLQLPFMPVQLQGGFPLQDYKQLPMSFCLDGINGGSGFASVDHGKVLFPFEDLKQVSSTTNNTTLDLDQQGYSSGIWTGMMGGGGGGSW 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03550 262 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 152 IPR045174 GO:0003700|GO:0006355
Trre1g03550 262 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Trre1g03550 262 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Trre1g03550 262 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Trre1g03550 262 MobiDBLite consensus disorder prediction 76 98 - -
Trre1g03550 262 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03550 Trre-Chr1 32601565 32602699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03550 1 262 C2C2-Dof Transcription Factor Family AT4G24060 38.551 1.82e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre1g03550 zf-Dof 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03550 - - mtr:25484548 281.182