Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03545 ATGTCAACAAGAAGATATGCTTTTGGAAGATTGGATGAAGCAAACCATCCAGACTCCATAAGAGCAACTGTAGCTGAATTCATTTCCACTTGCATCTTTGTCTTTGCTGGAGAAGGCTCTGCCCTTGCTCTAAGGAAGATATATAAGGATGCAGGGGCATCAGCAGGTGAGCTAGTGGTACTTGCACTAGCTCATGCATTTTCACTATTTGCTGCAATATCTGCTAGCATGCATGTATCTGGTGGCCATCTTAATCCTGCAGTTACTTTTGGTGCTCTTCTTGGTGGTAGAATTTCTGTCCTTAGAGCTGTCTACTATTGGGTTGCTCAACTTCTTGGTTCTGTAGTTGCTACCCTTTTATTGAGGCTTGTCACTAATAACATGAGACCACAGGGCTTCAATGTGGCAATAGGAGTAGGTGTAGGGCACGGCCTTATACTTGAGATAGTCATGACATTTGGTTTAATGTATGTTGTGTATGCCACTGCCATTGATCCCAAAAGGGGCTCTATAGGCACAATTGCTCCCTTAACAATTGCACTTGTTGTTGGGGCAAACATCCTAGCTGGTGGTCCTTTTGATGGAGCATGCATGAATCCTGCTCGGGCTTTTGGGCCTGCTTTAGTGGGCTGGAGATGGCATTATCATTGGATCTTTTGGGTTGGTCCATTACTTGGAGCTGCAATAGCAGCACTTTTATATGAATATATTATGGTTCCAACTGAACCTCCTCATACTCAAACTCATCCTCATCATCAACCTTTGGCTCCTGAAGATTATTAG 783 0.4368 MSTRRYAFGRLDEANHPDSIRATVAEFISTCIFVFAGEGSALALRKIYKDAGASAGELVVLALAHAFSLFAAISASMHVSGGHLNPAVTFGALLGGRISVLRAVYYWVAQLLGSVVATLLLRLVTNNMRPQGFNVAIGVGVGHGLILEIVMTFGLMYVVYATAIDPKRGSIGTIAPLTIALVVGANILAGGPFDGACMNPARAFGPALVGWRWHYHWIFWVGPLLGAAIAALLYEYIMVPTEPPHTQTHPHHQPLAPEDY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03545 260 FunFam Probable aquaporin TIP1-1 4 252 - -
Trre1g03545 260 SUPERFAMILY Aquaporin-like 14 247 IPR023271 -
Trre1g03545 260 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Trre1g03545 260 Gene3D Glycerol uptake facilitator protein. 4 245 IPR023271 -
Trre1g03545 260 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre1g03545 260 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre1g03545 260 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03545 Trre-Chr1 32442523 32444566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03545 2 260 Major Intrinsic Protein MIP AT1G73190 67.803 7.72e-124 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03545 K09873 - gmx:100814469 421.009