Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03529 ATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAGGCCGTGGGATATCAGTCACATAATTATAGTCGTTTTTATGAACAAAATAGTGGCATATGGATGCAGAGGATATCTACGACTTTGCTTTCGAATTATTTCCCCCTCAAAAACATATACACTGCAGGCTGACAATGAAGCTGATAGGATGGACTGGGTACACAAAATTACTGGAGTTATCACTTCACTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTAGAAAATATAAAATCAGCAACTGGTTCTTCTTTGACAAGTCAACAAGAGGATAACTGGGCATCTCTAAACCTTGGTATACTTCTGTGTATTGAATGCTACGAAGTGCACGACAATTTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTGAGGGTTTGGGAACCTACCATGTTGGAGTTATTCAATAACTTAGGTAATACTTATTGTAATTCTATTTGGGAGGGCTTGCTTCTACTTGGCGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGCTCCACAGATCCCTCCCAATATAAAGAAAAGTACATCCAAGCAAAGGTTGGTGTGACTGGAAATTTGGGCTCCTCTTCATGTTGGGCATGTTAG 657 0.3805 MGVYIITDQKDPRPWDISHIIIVVFMNKIVAYGCRGYLRLCFRIISPSKTYTLQADNEADRMDWVHKITGVITSLFNFQFLQQPHYGKLQLENIKSATGSSLTSQQEDNWASLNLGILLCIECYEVHDNFGVHISKVRSITLDVRVWEPTMLELFNNLGNTYCNSIWEGLLLLGDERVGESNVPLKPCSTDPSQYKEKYIQAKVGVTGNLGSSSCWAC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03529 218 SUPERFAMILY PH domain-like 36 88 - -
Trre1g03529 218 SMART arf_gap_3 88 217 IPR001164 GO:0005096
Trre1g03529 218 ProSiteProfiles PH domain profile. 1 73 IPR001849 -
Trre1g03529 218 PANTHER CENTAURIN/ARF 39 203 IPR045258 GO:0005096
Trre1g03529 218 Pfam Putative GTPase activating protein for Arf 105 201 IPR001164 GO:0005096
Trre1g03529 218 Gene3D Arf GTPase activating protein 94 205 IPR038508 -
Trre1g03529 218 CDD ArfGap 110 203 - -
Trre1g03529 218 ProSiteProfiles ARF GTPase-activating proteins domain profile. 99 203 IPR001164 GO:0005096
Trre1g03529 218 SUPERFAMILY ArfGap/RecO-like zinc finger 109 203 IPR037278 -
Trre1g03529 218 Gene3D - 10 79 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03529 Trre-Chr1 31983085 31985686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03529 81 214 C2H2 Transcription Factor Family AT4G21160 28.571 1.80e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03529 K12489 - gmx:100796006 254.218