Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03510 ATGGCAACTAGACTTCAGTTTGAGAATTCTTGTGAAATTGGTGTTTTCTCAAAACTTACTAATGCCTATTGTTTGGTTGCAACTGGTGGTTCTGAAAATTTCTACAGTGCATTTGAGGCCGAGTTATCGGATGTTATCCCTGTGGTCAAAACTTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTATTGGAAACAAGAACGGGCTTCTTTTGCCTCATACCACCACAGATCAAGAACTTCAACATTTGAAAAACAGTTTACCTGATCAAGTTCGTGTTGAGCGCATAGAAGAAAAGTTATCTGCTCTGGGTAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTCGACAAGGAAACTGAGGAGGTAGTTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACAGTTGCCGGTAATATTCTTGTTGGCAGTTACTGCGCTTTCTCCAACAAAGGTGGTTTGGTTCACCCTCATACTTCGATCGAAGACTTGGATGAATTATCTACACTTCTTCAAGTTCCTTTGTTTGCCGGGACAGTCAACCGTGGTAGCGAAGTAATAGCTGCTGGCATGACAGTCAATGATTGGACAGCATTTTGTGGTTCGGACACCACAGCAACAGAACTCTCGGTGATTGAAAATGTTTTTAAGCTAAGGGAAGCCAAGCCTAGTGCCACTGTGGATGAGATGAGGAAATCTCTCTTTGATAGCTAA 732 0.4276 MATRLQFENSCEIGVFSKLTNAYCLVATGGSENFYSAFEAELSDVIPVVKTSIGGTRIVGRLCIGNKNGLLLPHTTTDQELQHLKNSLPDQVRVERIEEKLSALGNCIACNDHVALTHTDLDKETEEVVADVLGVEVFRQTVAGNILVGSYCAFSNKGGLVHPHTSIEDLDELSTLLQVPLFAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIENVFKLREAKPSATVDEMRKSLFDS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03510 243 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Trre1g03510 243 Hamap Translation initiation factor 6 [eif6]. 1 243 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 Gene3D - 1 225 - -
Trre1g03510 243 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 242 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Trre1g03510 243 SUPERFAMILY Pentein 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03510 Trre-Chr1 31542528 31545060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03510 1 243 Eukaryotic Initiation Factors Gene Family AT3G55620 86.420 6.09e-165 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03510 K03264 - gmx:100777602 452.595