Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03509 ATGGCAACTAGACTTCAGTTTGAAAATTGTTGTGAAATTGGAGCCTTCTCAAAACTTACCAATGCCTATTGTTTGACTGCCATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAAACCTCCATTGGCGGCACTCGCCTTGTTGGTTTTCTTTCTGTTGGAAACAAGAACGGACTTTTATTGCCTCATACCACCACAGACCAAGAACTTCAACATCTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGAAGAAAAATTGTCTGCTCTTGGAAATTGTATAGCATGTAACGACCATGTGGCCCTTGCACACACTGATCTCGACAAGGAAACTGAGGAGTTGATTGCAGATGTTCTCGGAGTTGAAGTTTTCAGGCAGGCAGTTGCCGGTAATATTCTTTCGGGAAGTTACTGTGCTCTGTCCAACAGAGGTGGTTTGGTCCATCCTCATACTTCAGTTGAAGACTTGGATGAACTTTCTACACTTCTTCAAGTTCCTTTGGTTGCTGGAACCGTCAATCGTGGCAGTGAAGCAATAGCTTCTGGCATGGTAGTAAATGATTGGACAGCATTCTGTGGCTCAGACACCACAGCAACAGAGCTTTCTGTGATTGACAGTGTTTTCAAGCTGAGGGGAGACACAGCCTAG 690 0.442 MATRLQFENCCEIGAFSKLTNAYCLTAIGGSENFYSAFEAELADVIPVVKTSIGGTRLVGFLSVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALAHTDLDKETEELIADVLGVEVFRQAVAGNILSGSYCALSNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEAIASGMVVNDWTAFCGSDTTATELSVIDSVFKLRGDTA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03509 229 Hamap Translation initiation factor 6 [eif6]. 1 229 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 227 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Trre1g03509 229 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Trre1g03509 229 SUPERFAMILY Pentein 1 224 - -
Trre1g03509 229 Gene3D - 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03509 Trre-Chr1 31535849 31538439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03509 1 225 Eukaryotic Initiation Factors Gene Family AT3G55620 88.000 5.00e-152 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03509 K03264 - gmx:100777602 412.535