Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03502 ATGGCCACCACCAGGCGTTTGAGGGCATTTAAGCGATGGATGAAGTCTAATGGATTCGAATGGAGCGATGCATTGGAGTTTGTGGACACCCCAGAAGAAGGACTAGCTGTTAGAGCTTTGTGTCAAATGAATGAAGGTGAGGTGGTTGCTAAAATGCCAAAGGAAGCTTGTCTTACAATTAAGACTAGTGGTGCTTGTGATATCATTGAGAATGCTTGTTTGGGTGGTTATTTGGGTCTAGCTGTTGCTATTATGTATGAGAGAAGCTTAGGTGGAGATTCTCCCTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGACTCTTGATGAAGTTAACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGACAAAACTCTTGTATATGAGGACTGGCAAGAGAATATTCTACCCCTGTTGGAATCAGAACCTTCAAAGCTTAACCCGACATTCTTTGGTGTGGAACAATACTTTGCAGCCAAAAGTCTTATTTCTTCACGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACGGGTGCAGAAGATGTGCATTTCACTGCTTTGTCTTCTAATGATGAATCTGACGATGATAATGATGATGATGATGATGATGATGATGATGTTGTTGATGGTTTTGATGACGGCATTGTTGATGAAGAAGCATTGGCTCAAAATGGAGCTATGTATAAGACTGAGAACGGTGTTGTTAGCGATGTGGAGTATTCTTCAGTTATTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAGGATGTCAGCAGTGGAGTTGAGGTATTTAATACTTACGGCATATTGGGCAATGCTGCTTTGCTTCATAGATATGGATTTACTGAGAAAGATAACACCTATGATATTGTGAACATTGATTTGGAAATAGTACTTCAATGGTGTTCTTCTTTGTTCTCTGACCGTCACAGCAGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCCAGTGACAGCGAAAACTCTGAATATTTCGAGATATCATTTGACGGAGAACCGCAGATTGAACTCCTCATTCTATTATACATCATATTCTTAACAGATGATGTTTACCATAAATTAGACTTATCAGTAGCAATTGCTGGAAACTGCCATGAATCAAATGAAAAAACCAGTTTTTTGAATGTTGATAATATCTTTTTAGATAAGGCATCTAATATGAGCAAGAAAACTTTGCTGACAAAAGAAGTTTGTGATGCTTTGTTGTCACTGGCTGATATAAGGGATAGTCTCTATGGTATGAAATCAATAGAAGATGATATTGAGGCATTGGAAAGGTGTCGTTTTGTCAGAGATAGAAAGCTATATCATTCTTTAGTTCTGCGTATCAGTGAAAGGAAGATCCTTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACTAACCCTATTTCTGCCAGGAAGAAGTCGAAAAAGACAACAAAGAGGAAGAGTTAA 1542 0.3885 MATTRRLRAFKRWMKSNGFEWSDALEFVDTPEEGLAVRALCQMNEGEVVAKMPKEACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQECLPLVWTLDEVNQLLCGTELHQTVQEDKTLVYEDWQENILPLLESEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESDDDNDDDDDDDDDVVDGFDDGIVDEEALAQNGAMYKTENGVVSDVEYSSVIEDDTSMLEMVMIKDVSSGVEVFNTYGILGNAALLHRYGFTEKDNTYDIVNIDLEIVLQWCSSLFSDRHSRSRISLWRRLGYSSDSENSEYFEISFDGEPQIELLILLYIIFLTDDVYHKLDLSVAIAGNCHESNEKTSFLNVDNIFLDKASNMSKKTLLTKEVCDALLSLADIRDSLYGMKSIEDDIEALERCRFVRDRKLYHSLVLRISERKILQKLRNYASKSCKITNPISARKKSKKTTKRKS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03502 513 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 464 - -
Trre1g03502 513 ProSiteProfiles SET domain profile. 23 293 IPR001214 GO:0005515
Trre1g03502 513 MobiDBLite consensus disorder prediction 214 233 - -
Trre1g03502 513 MobiDBLite consensus disorder prediction 211 233 - -
Trre1g03502 513 Gene3D - 309 497 IPR036464 -
Trre1g03502 513 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 303 502 IPR036464 -
Trre1g03502 513 CDD SET_LSMT 24 307 - -
Trre1g03502 513 PIRSF RMS1_SET 1 493 IPR011383 GO:0016279|GO:0018026
Trre1g03502 513 Pfam SET domain 34 293 IPR001214 GO:0005515
Trre1g03502 513 Gene3D set domain protein methyltransferase, domain 1 3 306 - -
Trre1g03502 513 SUPERFAMILY SET domain 266 311 IPR046341 -
Trre1g03502 513 SUPERFAMILY SET domain 5 204 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03502 Trre-Chr1 31395931 31399219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03502 1 511 NAC Transcription Factor Family AT3G56570 54.120 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g03502 SET 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03502 - K05302 vra:106769924 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03502 1 31395931 31399219 Trre1g03502 1 31395931 31399219 ECH