Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03501 ATGTTTGAAACTGCTAAACCCTGGTGTGGAGAAAAATTCAGAGTGGCTACTTCCCAACTCCCTCTCCCCCTCTCCCCGCAAATGGCCACCACCAGGCGTTTGAGGGCATTTAAGCGATGGATGAAGTCTAATGGATTCGAATGGAGCGATGCATTGGAGTTTGTGGACACCCCAGAAGAAGGACTAGCTGTTAGAGCTTTGTGTCAAATGAATGAAGGTGAGGTGGTTGCTAAAATGCCAAAGGAAGCTTGTCTTACAATTAAGACTAGTGGTGCTTGTGATATCATTGAGAATGCTTGTTTGGGTGGTTATTTGGGTCTAGCTGTTGCTATTATGTATGAGAGAAGCTTAGGTGGAGATTCTCCCTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGACTCTTGATGAAGTTAACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGACAAAACTCTTGTATATGAGGACTGGCAAGAGAATATTCTACCCCTGTTGGAATCAGAACCTTCAAAGCTTAACCCGACATTCTTTGGTGTGGAACAATACTTTGCAGCCAAAAGTCTTATTTCTTCACGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACGGGTGCAGAAGATGTGCATTTCACTGCTTTGTCTTCTAATGATGAATCTGACGATGATAATGATGATGATGATGATGATGATGATGATGTTGTTGATGGTTTTGATGACGGCATTGTTGATGAAGAAGCATTGGCTCAAAATGGAGCTATGTATAAGACTGAGAACGGTGTTGTTAGCGATGTGGAGTATTCTTCAGTTATTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAGGATGTCAGCAGTGGAGTTGAGGTATTTAATACTTACGGCATATTGGGCAATGCTGCTTTGCTTCATAGATATGGATTTACTGAGAAAGATAACACCTATGATATTGTGAACATTGATTTGGAAATAGTACTTCAATGGTGTTCTTCTTTGTTCTCTGACCGTCACAGCAGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCCAGTGACAGCGAAAACTCTGAATATTTCGAGATATCATTTGACGGAGAACCGCAGATTGAACTCCTCATTCTATTATACATCATATTCTTAACAGATGATGTTTACCATAAATTAGACTTATCAGTAGCAATTGCTGGAAACTGCCATGAATCAAATGAAAAAACCAGTTTTTTGAATGTTGATAATATCTTTTTAGATAAGGCATCTAATATGAGCAAGAAAACTTTGCTGACAAAAGAAGTTTGTGATGCTTTGTTGTCACTGGCTGATATAAGGGATAGTCTCTATGGTATGAAATCAATAGAAGATGATATTGAGGCATTGGAAAGGTGTCGTTTTGTCAGAGATAGAAAGCTATATCATTCTTTAGTTCTGCGTATCAGTGAAAGGAAGATCCTTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACTAACCCTATTTCTGCCAGGAAGAAGTCGAAAAAGACAACAAAGAGGAAGAGTTAA 1623 0.3943 MFETAKPWCGEKFRVATSQLPLPLSPQMATTRRLRAFKRWMKSNGFEWSDALEFVDTPEEGLAVRALCQMNEGEVVAKMPKEACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQECLPLVWTLDEVNQLLCGTELHQTVQEDKTLVYEDWQENILPLLESEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESDDDNDDDDDDDDDVVDGFDDGIVDEEALAQNGAMYKTENGVVSDVEYSSVIEDDTSMLEMVMIKDVSSGVEVFNTYGILGNAALLHRYGFTEKDNTYDIVNIDLEIVLQWCSSLFSDRHSRSRISLWRRLGYSSDSENSEYFEISFDGEPQIELLILLYIIFLTDDVYHKLDLSVAIAGNCHESNEKTSFLNVDNIFLDKASNMSKKTLLTKEVCDALLSLADIRDSLYGMKSIEDDIEALERCRFVRDRKLYHSLVLRISERKILQKLRNYASKSCKITNPISARKKSKKTTKRKS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03501 540 PIRSF RMS1_SET 24 520 IPR011383 GO:0016279|GO:0018026
Trre1g03501 540 SUPERFAMILY SET domain 32 231 IPR046341 -
Trre1g03501 540 Gene3D set domain protein methyltransferase, domain 1 30 333 - -
Trre1g03501 540 Pfam SET domain 61 320 IPR001214 GO:0005515
Trre1g03501 540 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 32 491 - -
Trre1g03501 540 MobiDBLite consensus disorder prediction 238 260 - -
Trre1g03501 540 SUPERFAMILY SET domain 293 338 IPR046341 -
Trre1g03501 540 Gene3D - 336 524 IPR036464 -
Trre1g03501 540 MobiDBLite consensus disorder prediction 241 260 - -
Trre1g03501 540 ProSiteProfiles SET domain profile. 50 320 IPR001214 GO:0005515
Trre1g03501 540 CDD SET_LSMT 51 334 - -
Trre1g03501 540 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 330 528 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03501 Trre-Chr1 31395931 31399300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03501 28 538 NAC Transcription Factor Family AT3G56570 54.120 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g03501 SET 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03501 - K05302 vra:106769924 705.286