LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g03501	ATGTTTGAAACTGCTAAACCCTGGTGTGGAGAAAAATTCAGAGTGGCTACTTCCCAACTCCCTCTCCCCCTCTCCCCGCAAATGGCCACCACCAGGCGTTTGAGGGCATTTAAGCGATGGATGAAGTCTAATGGATTCGAATGGAGCGATGCATTGGAGTTTGTGGACACCCCAGAAGAAGGACTAGCTGTTAGAGCTTTGTGTCAAATGAATGAAGGTGAGGTGGTTGCTAAAATGCCAAAGGAAGCTTGTCTTACAATTAAGACTAGTGGTGCTTGTGATATCATTGAGAATGCTTGTTTGGGTGGTTATTTGGGTCTAGCTGTTGCTATTATGTATGAGAGAAGCTTAGGTGGAGATTCTCCCTGGGCTGGTTATCTTCAGCTTTTGCCTCAACAGGAATGTTTGCCTTTGGTTTGGACTCTTGATGAAGTTAACCAGCTTTTGTGTGGTACTGAGCTTCATCAGACAGTGCAAGAAGACAAAACTCTTGTATATGAGGACTGGCAAGAGAATATTCTACCCCTGTTGGAATCAGAACCTTCAAAGCTTAACCCGACATTCTTTGGTGTGGAACAATACTTTGCAGCCAAAAGTCTTATTTCTTCACGATCTTTCGAGATAGATGATTACCATGGTTTTGGCATGGTTCCCCTGGCAGATCTATTCAATCATAAAACGGGTGCAGAAGATGTGCATTTCACTGCTTTGTCTTCTAATGATGAATCTGACGATGATAATGATGATGATGATGATGATGATGATGATGTTGTTGATGGTTTTGATGACGGCATTGTTGATGAAGAAGCATTGGCTCAAAATGGAGCTATGTATAAGACTGAGAACGGTGTTGTTAGCGATGTGGAGTATTCTTCAGTTATTGAGGATGATACTTCAATGCTGGAGATGGTTATGATAAAGGATGTCAGCAGTGGAGTTGAGGTATTTAATACTTACGGCATATTGGGCAATGCTGCTTTGCTTCATAGATATGGATTTACTGAGAAAGATAACACCTATGATATTGTGAACATTGATTTGGAAATAGTACTTCAATGGTGTTCTTCTTTGTTCTCTGACCGTCACAGCAGATCAAGAATCTCCCTTTGGAGAAGGTTAGGCTATTCCAGTGACAGCGAAAACTCTGAATATTTCGAGATATCATTTGACGGAGAACCGCAGATTGAACTCCTCATTCTATTATACATCATATTCTTAACAGATGATGTTTACCATAAATTAGACTTATCAGTAGCAATTGCTGGAAACTGCCATGAATCAAATGAAAAAACCAGTTTTTTGAATGTTGATAATATCTTTTTAGATAAGGCATCTAATATGAGCAAGAAAACTTTGCTGACAAAAGAAGTTTGTGATGCTTTGTTGTCACTGGCTGATATAAGGGATAGTCTCTATGGTATGAAATCAATAGAAGATGATATTGAGGCATTGGAAAGGTGTCGTTTTGTCAGAGATAGAAAGCTATATCATTCTTTAGTTCTGCGTATCAGTGAAAGGAAGATCCTTCAAAAACTCAGAAATTATGCTTCAAAGTCATGTAAGATTACTAACCCTATTTCTGCCAGGAAGAAGTCGAAAAAGACAACAAAGAGGAAGAGTTAA	1623	0.3943	MFETAKPWCGEKFRVATSQLPLPLSPQMATTRRLRAFKRWMKSNGFEWSDALEFVDTPEEGLAVRALCQMNEGEVVAKMPKEACLTIKTSGACDIIENACLGGYLGLAVAIMYERSLGGDSPWAGYLQLLPQQECLPLVWTLDEVNQLLCGTELHQTVQEDKTLVYEDWQENILPLLESEPSKLNPTFFGVEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTALSSNDESDDDNDDDDDDDDDVVDGFDDGIVDEEALAQNGAMYKTENGVVSDVEYSSVIEDDTSMLEMVMIKDVSSGVEVFNTYGILGNAALLHRYGFTEKDNTYDIVNIDLEIVLQWCSSLFSDRHSRSRISLWRRLGYSSDSENSEYFEISFDGEPQIELLILLYIIFLTDDVYHKLDLSVAIAGNCHESNEKTSFLNVDNIFLDKASNMSKKTLLTKEVCDALLSLADIRDSLYGMKSIEDDIEALERCRFVRDRKLYHSLVLRISERKILQKLRNYASKSCKITNPISARKKSKKTTKRKS	540

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre1g03501	540	PIRSF	RMS1_SET	24	520	IPR011383	GO:0016279\|GO:0018026
Trre1g03501	540	SUPERFAMILY	SET domain	32	231	IPR046341	-
Trre1g03501	540	Gene3D	set domain protein methyltransferase, domain 1	30	333	-	-
Trre1g03501	540	Pfam	SET domain	61	320	IPR001214	GO:0005515
Trre1g03501	540	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	32	491	-	-
Trre1g03501	540	MobiDBLite	consensus disorder prediction	238	260	-	-
Trre1g03501	540	SUPERFAMILY	SET domain	293	338	IPR046341	-
Trre1g03501	540	Gene3D	-	336	524	IPR036464	-
Trre1g03501	540	MobiDBLite	consensus disorder prediction	241	260	-	-
Trre1g03501	540	ProSiteProfiles	SET domain profile.	50	320	IPR001214	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g03501	Trre-Chr1	31395931	31399300	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g03501	28	538	NAC Transcription Factor Family	AT3G56570	54.120	0.0	525

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Trre1g03501		SET	4.7e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g03501	-		K05302	vra:106769924	705.286

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