Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03499 ATGGAGAAAAAGATAGTAGTGAAATACAAAGAGTGTCTTAAGAACCATGCAGCTTCAATTGGTGGGAATGCAATTGATGGATGTGGTGAGTTTATGTCAAGTGGAGAAAATGATACACTTGAAGCTCTCAAATGTTGTGTTTGCAATTGTCACAGAAATTTCCACAGAAAAGAAATAGAGTCTGATTATTATTATTCTCAACATTATGCAATTGATCATAACATTAATGCACCCTTCTTGGCTCATTTATCTCCAAACAATATCAAAAGTGGATCAACTAGTCCTTCTAATCAGTCTTATTATGAGAAAGAGGTTGAAAATCGAAGCGAAAAGATGATAAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAGAAGGAGAAGATGTTGTATTTTGCAGAAAAGGCAGAGTGGAAGATACAGAAACTAGAGGAATCTGTGGTGAACAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATACTCAAAGTGTGGATGCATAATAATAAGAACACTTTTGCTAAGAGAAGTAATAGCAAGGTTATCAGAATCGAGAGTTTACGTTGA 567 0.3474 MEKKIVVKYKECLKNHAASIGGNAIDGCGEFMSSGENDTLEALKCCVCNCHRNFHRKEIESDYYYSQHYAIDHNINAPFLAHLSPNNIKSGSTSPSNQSYYEKEVENRSEKMIKKRSRTKFSKEQKEKMLYFAEKAEWKIQKLEESVVNKFCQEIGIKRRILKVWMHNNKNTFAKRSNSKVIRIESLR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03499 188 FunFam Zinc-finger homeodomain protein 2 101 175 - -
Trre1g03499 188 Coils Coil 184 188 - -
Trre1g03499 188 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Trre1g03499 188 Gene3D - 99 176 - -
Trre1g03499 188 SUPERFAMILY Homeodomain-like 109 175 IPR009057 -
Trre1g03499 188 NCBIfam homeobox domain, ZF-HD class 114 171 IPR006455 -
Trre1g03499 188 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Trre1g03499 188 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Trre1g03499 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03499 Trre-Chr1 31386840 31387406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03499 2 178 ZF-HD Transcription Factor Family AT2G02540 47.143 1.66e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre1g03499 ZF-HD_dimer 8.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03499 - - gmx:100793926 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03499 1 31386840 31387406 Trre1g03499 1 31386840 31387406 ECH