Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03493 ATGGTCGTTAGCGGAGGCAAATCCCTGAAACGTATGAAAAGGAGAGTCACTGCCGATCACCACGATTTCTATTCATTCCCTTCACCATCCGTCTCCGTATCAGAAAACTTCTCCGGCGGACCATTCCGTTCCAACATCCGATCTTTTCTCACCAAGTACGCGCTTCTTCCGCCGCCGTCGGCGCTGTTTCCACATTTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGATGGTTCTGATTCAGGCCCCGCGGTGGTGTGCCTCGATGTCGTCGAAGAGGACGTGGCTAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTTGGTTGGAGCGGCAACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAATCTGATGGGAGATCAATTGGTGGATACCACAAACCGTGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAGTGTAAGTCATGTAACCATGTGACAACTAGTGATGACGTTGAAGACTGGGTGTACCACCAACTAGAGAACACGAGTCATCTTTTGCACGGTGTTATCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTTAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTACGAAGAGACGCCCATGGTACGGTGAGTGGGGATATAATTTTGGCTCCGGTAGCTATTGTCTCACACAGGAAGCATATAAGTCTGCTCTTGAAAGCTTATCCAATCTACCCTTGTCCGTCTTCCTCTCCCAGGAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGAGCACAAGCTTGTAAATCTGAGGGACCTATTTTCTTTTTTGATGGGTTTGATGCATGATGCTCGCAAGAATGCCTCTAAGTCTGATGACATACCCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGAGAAGAGTGACATTGAGCGCGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCCGCCGTGCTCTTAGGGGTGCAGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGCCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGTGGGGTTGTTAATAGCAGATGCAACCCTCAAACAGGAGTTTATGAATTCAGAATTGATGCTACAAATGATTCTTGCTTCGATGGATTTATGGCCAGCAATAATTCTTCTGGCCCAAAGTGCCCATCTGAAGAGCATCTCATGCAATGCTTGAGATATTTATACGAGTCTTTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCGATGAGCTCGGCTCAGAGGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGTTCTGAGATTTTGCCAGTGTCAGATTTGTATAAAATGCGCATCTCATGTCAGGTTGAACTTGCTGACCAATCCGAAGATTCTGCAGCTAGAACTCCACCAGAAATAATTGTGCTGCCCACAAATGCCACGGTATCTGACCTTAAGATTGAAGCAGCAAATGCTTTTCAAGACATATATCTAATGTTTAGAAGATTTCAAGTTGAAGAGCTACTTGGCTACAGTGGTGTAGATGATTCCACCCAGGTCAAGCTCTTGTTAGGATCAAATGAAGTGGTTTGTCTCCGAGGAAAATGCTCCGGGAAGACTGGGTTGAGTAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGCAACTGTGGGGCTAAAGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGGGTGTGGCGGCACACTCGATGTTCTGGCATTCCTGATACCGCTCCTGTTCCAGCTCGTTTTGTTTGCCACAAATGCCAAAGTTGTGACTCAAAGCCTAAATCTAGTGGGCATTGTAAAGATGAGGAGACTGGTACTAGTGTTAGTACTACTACCAGTAGTTGCTTTGGAAATGGCCTGCAAGTGCCTTCTGATGTTTCCTTTAGGCATTGA 2151 0.464 MVVSGGKSLKRMKRRVTADHHDFYSFPSPSVSVSENFSGGPFRSNIRSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGSDSGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGNPVCGKRYHFIIKSDGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVIHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKRRPWYGEWGYNFGSGSYCLTQEAYKSALESLSNLPLSVFLSQEQKPHSRVQDMILYYQSLSEHKLVNLRDLFSFLMGLMHDARKNASKSDDIPCKKRRFDASGLSSSWEKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGVVNSRCNPQTGVYEFRIDATNDSCFDGFMASNNSSGPKCPSEEHLMQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQRLLDCKQLVKDYCSEILPVSDLYKMRISCQVELADQSEDSAARTPPEIIVLPTNATVSDLKIEAANAFQDIYLMFRRFQVEELLGYSGVDDSTQVKLLLGSNEVVCLRGKCSGKTGLSKFRMERGLERWTVECNCGAKDDDGERMMACDTCGVWRHTRCSGIPDTAPVPARFVCHKCQSCDSKPKSSGHCKDEETGTSVSTTTSSCFGNGLQVPSDVSFRH 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03493 716 SUPERFAMILY FYVE/PHD zinc finger 617 673 IPR011011 -
Trre1g03493 716 SMART PHD_3 627 673 IPR001965 -
Trre1g03493 716 ProSiteProfiles Zinc finger PHD-type profile. 625 675 IPR019787 -
Trre1g03493 716 CDD PHD_MMD1_like 627 672 - -
Trre1g03493 716 Pfam PHD-finger 628 675 IPR019787 -
Trre1g03493 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 687 - -
Trre1g03493 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 678 IPR013083 -
Trre1g03493 716 MobiDBLite consensus disorder prediction 675 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03493 Trre-Chr1 31360938 31365621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03493 83 677 PHD Transcription Factor Family AT5G22260 31.051 6.38e-88 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre1g03493 PHD 5.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03493 K26271 - gmx:100818189 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03493 1 31360938 31365621 Trre1g03493 1 31360938 31365621 ECH