Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03480 ATGAAAGCTAGCTTGGACCCAAAGAATCATTTTTTACCATCTTGGACCATCAATGGTGATCCATGTGATGAATCTTTTGAAGGAGTAGCATGCAATGAAAAGGGTCAAGTTGTTAACATTTCTTTGCAAGGAAAAGGTTTATCAGGGAAGCTTTCATCATCCATTGTTGATCTTAAACATTTGACAGGACTTTACTTGCATTATAATTCTTTGTATGGTGAGATACCGAAGGAAGTTTCGAATTTGACTCAACTTGGTGAGTTGTATTTGAATGTGAATCAATTTTATGGGGAAATTCCTTTTGAGATTGGAAGCATGGAGAATTTACAAGTTTTGCAGCTTTCTTATAATCAGTTGACAGGAAGTATACCTACACAACTTGGTGCTTTGAAAAAATTATCTGTTGTTGCTTTGAAGTCAAACCAATTAAGTGGTGCTATCCCTGCTACTCTAGGTGATTTGGGTATGCTGGTGAGACTAGATTTGAGCTCTAACATTCTCATTGGTTCCATTCCCACTAGCCTAGCTAGTGTTCCTTCATTGAAAATTTTGGATGTTCACAATAATACACTTTCTGGGAATGTTCCTCCTGCTCTTAAGAGACTACATGATGGATTTTTATATGAACAAAATATGGGGTTATGTGGAGTTGGGTTTCCATCCTTGAAAACTTGCAATACAAGCAAAGATGGATCATCAACAAAACATATCCCAGAAATTGCAAATATGACATTATCTTGCAATGGAAGTCAATGCCTTCATTCATCGATATTCAATCAAGCCAAATCAATTATTGTTGGCATATCTGTGGTTATGATTTTAGTGTTGGCAATTGGTATCTTAATCTTCACAATATATCTGCGTCGAAGAAAACAAAATCTTGAAAATTCTTTTCATAGCTCTGATAGCCGTCTAAGTACCAACGAAGCCAAGGGTATATACCGGAAAAATGAGTCTCCTTTGCCCTGCCTTGAGTATTCTACTAGATCCGACCCTTTGGTGGATTATAGAGATTTCGACGGGGAAAGCCAAGACAGGTTCGGTATTTTCATGTTCAACTTGGAAGAAGTGGAGTTAGCCACTCAAAATTTCGCGGATTCGAATTTGTTAGGCAAGAGTGAATTTTGTGCAACATATAAAGGTGTCTTAAGAGATGGTTCTGTTGTTGCTGTGAAGAGCATTAACAAAAATAGTTGCAAGTATGATGAAGAAGAGGTTATGAAGATATTGAATAGTTTGGCATCAATGAGGAATGATAATTTAGTAAGGTTGAGAGGATTTTGTTGTTCAAGAGAAAGAGATGAATGTTTTCTGATCTATGATTTTGTTCCTAATGGAAAATTGTCACGTTTCCTTGATTTGCAAGAAAGTGATGAAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGCAAAAGGAATTGCTAAAGGTATGGCATATTTGCATTCAAACAAACCTGTCATTATTCACCAAAACATCTCAAGTGAAAAAATTCTAATAGATCAGAGGTACAGTCCATTGTTGGATGATTATGGCCTGTACAAGCTTTTTACAAATGATATTGTCTTCTCTGCACTTAAAGCTAGTGCAACAAAGGGTTACATGGCTCCCGAATACACAACTACGGGTCGGTTTCCGGAGGCAAGTGATGTTTATGCTTTTGGAATGGTGCTTTTCCAAATCCTTTCAGGGAAGAAAGAGATAACTAGCTCATTAAGACTTGCTGCAGAGTCCTTCAATTTCAAGGAATTTATTGATCCAAATCTTAATGGAAGATTCTTTGAGTGTGATGCAGCTAAATTGACAAAAATAGCTATGTTTTGCATGCATGAGTCTCCATTTGAGAGGCCATGTATGGAAGCAATTGTTAAAGAATTGATCAATTGTACTAGTTGTCTATGA 1902 0.3665 MKASLDPKNHFLPSWTINGDPCDESFEGVACNEKGQVVNISLQGKGLSGKLSSSIVDLKHLTGLYLHYNSLYGEIPKEVSNLTQLGELYLNVNQFYGEIPFEIGSMENLQVLQLSYNQLTGSIPTQLGALKKLSVVALKSNQLSGAIPATLGDLGMLVRLDLSSNILIGSIPTSLASVPSLKILDVHNNTLSGNVPPALKRLHDGFLYEQNMGLCGVGFPSLKTCNTSKDGSSTKHIPEIANMTLSCNGSQCLHSSIFNQAKSIIVGISVVMILVLAIGILIFTIYLRRRKQNLENSFHSSDSRLSTNEAKGIYRKNESPLPCLEYSTRSDPLVDYRDFDGESQDRFGIFMFNLEEVELATQNFADSNLLGKSEFCATYKGVLRDGSVVAVKSINKNSCKYDEEEVMKILNSLASMRNDNLVRLRGFCCSRERDECFLIYDFVPNGKLSRFLDLQESDEEVLEWSTRVSIAKGIAKGMAYLHSNKPVIIHQNISSEKILIDQRYSPLLDDYGLYKLFTNDIVFSALKASATKGYMAPEYTTTGRFPEASDVYAFGMVLFQILSGKKEITSSLRLAAESFNFKEFIDPNLNGRFFECDAAKLTKIAMFCMHESPFERPCMEAIVKELINCTSCL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03480 633 Pfam Protein tyrosine and serine/threonine kinase 368 626 IPR001245 GO:0004672|GO:0006468
Trre1g03480 633 Gene3D Transferase(Phosphotransferase) domain 1 444 632 - -
Trre1g03480 633 ProSiteProfiles Protein kinase domain profile. 364 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03480 633 Gene3D Ribonuclease Inhibitor 108 226 IPR032675 -
Trre1g03480 633 SUPERFAMILY L domain-like 5 202 - -
Trre1g03480 633 FunFam Protein NSP-INTERACTING KINASE 2 335 442 - -
Trre1g03480 633 SUPERFAMILY Protein kinase-like (PK-like) 345 627 IPR011009 -
Trre1g03480 633 Gene3D Ribonuclease Inhibitor 1 107 IPR032675 -
Trre1g03480 633 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 127 626 IPR046959 -
Trre1g03480 633 Pfam Leucine rich repeat N-terminal domain 1 32 IPR013210 -
Trre1g03480 633 FunFam Protein NSP-INTERACTING KINASE 2 1 140 - -
Trre1g03480 633 Gene3D Phosphorylase Kinase; domain 1 340 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03480 Trre-Chr1 31262091 31265923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03480 1 477 Miscellaneous Gene Families AT4G22730 52.000 3.74e-167 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre1g03480 PK_Tyr_Ser-Thr 2.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03480 - - gmx:100775422 908.672