Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03479 ATGGCTATGAAAGCTAGCTTGGACCCAAAGAATCATTTTTTACCATCTTGGACCATCAATGGTGATCCATGTGATGAATCTTTTGAAGGAGTAGCATGCAATGAAAAGGGTCAAGTTGTTAACATTTCTTTGCAAGGAAAAGGTTTATCAGGGAAGCTTTCATCATCCATTGTTGATCTTAAACATTTGACAGGACTTTACTTGCATTATAATTCTTTGTATGGTGAGATACCGAAGGAAGTTTCGAATTTGACTCAACTTGGTGAGTTGTATTTGAATGTGAATCAATTTTATGGGGAAATTCCTTTTGAGATTGGAAGCATGGAGAATTTACAAGTTTTGCAGCTTTCTTATAATCAGTTGACAGGAAGTATACCTACACAACTTGGTGCTTTGAAAAAATTATCTGTTGTTGCTTTGAAGTCAAACCAATTAAGTGGTGCTATCCCTGCTACTCTAGGTGATTTGGGTATGCTGGTGAGACTAGATTTGAGCTCTAACATTCTCATTGGTTCCATTCCCACTAGCCTAGCTAGTGTTCCTTCATTGAAAATTTTGGATGTTCACAATAATACACTTTCTGGGAATGTTCCTCCTGCTCTTAAGAGACTACATGATGGATTTTTATATGAACAAAATATGGGGTTATGTGGAGTTGGGTTTCCATCCTTGAAAACTTGCAATACAAGCAAAGATGGATCATCAACAAAACATATCCCAGAAATTGCAAATATGACATTATCTTGCAATGGAAGTCAATGCCTTCATTCATCGATATTCAATCAAGCCAAATCAATTATTGTTGGCATATCTGTGGTTATGATTTTAGTGTTGGCAATTGGTATCTTAATCTTCACAATATATCTGCGTCGAAGAAAACAAAATCTTGAAAATTCTTTTCATAGCTCTGATAGCCGTCTAAGTACCAACGAAGCCAAGGGTATATACCGGAAAAATGAGTCTCCTTTGCCCTGCCTTGAGTATTCTACTAGATCCGACCCTTTGGTGGATTATAGAGATTTCGACGGGGAAAGCCAAGACAGGTTCGGTATTTTCATGTTCAACTTGGAAGAAGTGGAGTTAGCCACTCAAAATTTCGCGGATTCGAATTTGTTAGGCAAGAGTGAATTTTGTGCAACATATAAAGGTGTCTTAAGAGATGGTTCTGTTGTTGCTGTGAAGAGCATTAACAAAAATAGTTGCAAGTATGATGAAGAAGAGGTTATGAAGATATTGAATAGTTTGGCATCAATGAGGAATGATAATTTAGTAAGGTTGAGAGGATTTTGTTGTTCAAGAGAAAGAGATGAATGTTTTCTGATCTATGATTTTGTTCCTAATGGAAAATTGTCACGTTTCCTTGATTTGCAAGAAAGTGATGAAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGCAAAAGGAATTGCTAAAGGTATGGCATATTTGCATTCAAACAAACCTGTCATTATTCACCAAAACATCTCAAGTGAAAAAATTCTAATAGATCAGAGGTACAGTCCATTGTTGGATGATTATGGCCTGTACAAGCTTTTTACAAATGATATTGTCTTCTCTGCACTTAAAGCTAGTGCAACAAAGGGTTACATGGCTCCCGAATACACAACTACGGGTCGGTTTCCGGAGGCAAGTGATGTTTATGCTTTTGGAATGGTGCTTTTCCAAATCCTTTCAGGGAAGAAAGAGATAACTAGCTCATTAAGACTTGCTGCAGAGTCCTTCAATTTCAAGGAATTTATTGATCCAAATCTTAATGGAAGATTCTTTGAGTGTGATGCAGCTAAATTGACAAAAATAGCTATGTTTTGCATGCATGAGTCTCCATTTGAGAGGCCATGTATGGAAGCAATTGTTAAAGAATTGATCAATTGTACTAGTTGTCTATGA 1908 0.3669 MAMKASLDPKNHFLPSWTINGDPCDESFEGVACNEKGQVVNISLQGKGLSGKLSSSIVDLKHLTGLYLHYNSLYGEIPKEVSNLTQLGELYLNVNQFYGEIPFEIGSMENLQVLQLSYNQLTGSIPTQLGALKKLSVVALKSNQLSGAIPATLGDLGMLVRLDLSSNILIGSIPTSLASVPSLKILDVHNNTLSGNVPPALKRLHDGFLYEQNMGLCGVGFPSLKTCNTSKDGSSTKHIPEIANMTLSCNGSQCLHSSIFNQAKSIIVGISVVMILVLAIGILIFTIYLRRRKQNLENSFHSSDSRLSTNEAKGIYRKNESPLPCLEYSTRSDPLVDYRDFDGESQDRFGIFMFNLEEVELATQNFADSNLLGKSEFCATYKGVLRDGSVVAVKSINKNSCKYDEEEVMKILNSLASMRNDNLVRLRGFCCSRERDECFLIYDFVPNGKLSRFLDLQESDEEVLEWSTRVSIAKGIAKGMAYLHSNKPVIIHQNISSEKILIDQRYSPLLDDYGLYKLFTNDIVFSALKASATKGYMAPEYTTTGRFPEASDVYAFGMVLFQILSGKKEITSSLRLAAESFNFKEFIDPNLNGRFFECDAAKLTKIAMFCMHESPFERPCMEAIVKELINCTSCL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03479 635 Gene3D Ribonuclease Inhibitor 109 228 IPR032675 -
Trre1g03479 635 SUPERFAMILY Protein kinase-like (PK-like) 347 629 IPR011009 -
Trre1g03479 635 Pfam Protein tyrosine and serine/threonine kinase 370 628 IPR001245 GO:0004672|GO:0006468
Trre1g03479 635 Gene3D Ribonuclease Inhibitor 1 108 IPR032675 -
Trre1g03479 635 ProSiteProfiles Protein kinase domain profile. 366 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03479 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 128 628 IPR046959 -
Trre1g03479 635 FunFam Protein NSP-INTERACTING KINASE 2 337 444 - -
Trre1g03479 635 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Trre1g03479 635 SUPERFAMILY L domain-like 7 204 - -
Trre1g03479 635 Gene3D Phosphorylase Kinase; domain 1 342 444 - -
Trre1g03479 635 Gene3D Transferase(Phosphotransferase) domain 1 446 634 - -
Trre1g03479 635 FunFam Protein NSP-INTERACTING KINASE 2 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03479 Trre-Chr1 31262091 31265929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03479 1 479 Miscellaneous Gene Families AT4G22730 51.992 5.92e-168 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre1g03479 PK_Tyr_Ser-Thr 2.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03479 - - gmx:100775422 909.827