Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03478 ATGGCTATGAAAGCTAGCTTGGACCCAAAGAATCATTTTTTACCATCTTGGACCATCAATGGTGATCCATGTGATGAATCTTTTGAAGGAGTAGCATGCAATGAAAAGGGTCAAGTTGTTAACATTTCTTTGCAAGGAAAAGGTTTATCAGGGAAGCTTTCATCATCCATTGTTGATCTTAAACATTTGACAGGACTTTACTTGCATTATAATTCTTTGTATGGTGAGATACCGAAGGAAGTTTCGAATTTGACTCAACTTGGTGAGTTGTATTTGAATGTGAATCAATTTTATGGGGAAATTCCTTTTGAGATTGGAAGCATGGAGAATTTACAAGTTTTGCAGCTTTCTTATAATCAGTTGACAGGAAGTATACCTACACAACTTGGTGCTTTGAAAAAATTATCTGTTGTTGCTTTGAAGTCAAACCAATTAAGTGGTGCTATCCCTGCTACTCTAGGTGATTTGGGTATGCTGGTGAGACTAGATTTGAGCTCTAACATTCTCATTGGTTCCATTCCCACTAGCCTAGCTAGTGTTCCTTCATTGAAAATTTTGGATGTTCACAATAATACACTTTCTGGGAATGTTCCTCCTGTGTTGGCAATTGGTATCTTAATCTTCACAATATATCTGCGTCGAAGAAAACAAAATCTTGAAAATTCTTTTCATAGCTCTGATAGCCGTCTAAGTACCAACGAAGCCAAGGGTATATACCGGAAAAATGAGTCTCCTTTGCCCTGCCTTGAGTATTCTACTAGATCCGACCCTTTGGTGGATTATAGAGATTTCGACGGGGAAAGCCAAGACAGGTTCGGTATTTTCATGTTCAACTTGGAAGAAGTGGAGTTAGCCACTCAAAATTTCGCGGATTCGAATTTGTTAGGCAAGAGTGAATTTTGTGCAACATATAAAGGTGTCTTAAGAGATGGTTCTGTTGTTGCTGTGAAGAGCATTAACAAAAATAGTTGCAAGTATGATGAAGAAGAGGTTATGAAGATATTGAATAGTTTGGCATCAATGAGGAATGATAATTTAGTAAGGTTGAGAGGATTTTGTTGTTCAAGAGAAAGAGATGAATGTTTTCTGATCTATGATTTTGTTCCTAATGGAAAATTGTCACGTTTCCTTGATTTGCAAGAAAGTGATGAAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGCAAAAGGAATTGCTAAAGGTATGGCATATTTGCATTCAAACAAACCTGTCATTATTCACCAAAACATCTCAAGTGAAAAAATTCTAATAGATCAGAGGTACAGTCCATTGTTGGATGATTATGGCCTGTACAAGCTTTTTACAAATGATATTGTCTTCTCTGCACTTAAAGCTAGTGCAACAAAGGGTTACATGGCTCCCGAATACACAACTACGGGTCGGTTTCCGGAGGCAAGTGATGTTTATGCTTTTGGAATGGTGCTTTTCCAAATCCTTTCAGGGAAGAAAGAGATAACTAGCTCATTAAGACTTGCTGCAGAGTCCTTCAATTTCAAGGAATTTATTGATCCAAATCTTAATGGAAGATTCTTTGAGTGTGATGCAGCTAAATTGACAAAAATAGCTATGTTTTGCATGCATGAGTCTCCATTTGAGAGGCCATGTATGGAAGCAATTGTTAAAGAATTGATCAATTGTACTAGTTGTCTATGA 1677 0.3709 MAMKASLDPKNHFLPSWTINGDPCDESFEGVACNEKGQVVNISLQGKGLSGKLSSSIVDLKHLTGLYLHYNSLYGEIPKEVSNLTQLGELYLNVNQFYGEIPFEIGSMENLQVLQLSYNQLTGSIPTQLGALKKLSVVALKSNQLSGAIPATLGDLGMLVRLDLSSNILIGSIPTSLASVPSLKILDVHNNTLSGNVPPVLAIGILIFTIYLRRRKQNLENSFHSSDSRLSTNEAKGIYRKNESPLPCLEYSTRSDPLVDYRDFDGESQDRFGIFMFNLEEVELATQNFADSNLLGKSEFCATYKGVLRDGSVVAVKSINKNSCKYDEEEVMKILNSLASMRNDNLVRLRGFCCSRERDECFLIYDFVPNGKLSRFLDLQESDEEVLEWSTRVSIAKGIAKGMAYLHSNKPVIIHQNISSEKILIDQRYSPLLDDYGLYKLFTNDIVFSALKASATKGYMAPEYTTTGRFPEASDVYAFGMVLFQILSGKKEITSSLRLAAESFNFKEFIDPNLNGRFFECDAAKLTKIAMFCMHESPFERPCMEAIVKELINCTSCL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03478 558 SUPERFAMILY Protein kinase-like (PK-like) 270 552 IPR011009 -
Trre1g03478 558 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 267 551 - -
Trre1g03478 558 ProSiteProfiles Protein kinase domain profile. 289 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03478 558 Pfam Protein tyrosine and serine/threonine kinase 293 551 IPR001245 GO:0004672|GO:0006468
Trre1g03478 558 Gene3D Phosphorylase Kinase; domain 1 265 367 - -
Trre1g03478 558 Gene3D Ribonuclease Inhibitor 107 206 IPR032675 -
Trre1g03478 558 SUPERFAMILY L domain-like 7 212 - -
Trre1g03478 558 FunFam Protein NSP-INTERACTING KINASE 2 1 142 - -
Trre1g03478 558 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Trre1g03478 558 Gene3D Ribonuclease Inhibitor 1 106 IPR032675 -
Trre1g03478 558 Gene3D Transferase(Phosphotransferase) domain 1 369 557 - -
Trre1g03478 558 FunFam Protein NSP-INTERACTING KINASE 2 260 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03478 Trre-Chr1 31262091 31265929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03478 1 402 Miscellaneous Gene Families AT4G22730 43.227 2.15e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trre1g03478 PK_Tyr_Ser-Thr 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03478 - - gmx:100775422 632.869