Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03473 ATGACTCCAAGCGATGGAGGCTTTCAGGACAGATACATTGTATCCATTGATACTAAAGGGAAGAAAGGATTTAAAGAGTATTATTTTGCTTTGGTCGTTCCAATTATACTATGCTATCTGGGATCTGGTTATCTATGTGGTAGATTGTTGAAGTCTTACAGTTCATTGCCAATCAAGAAAGAAGGGCTGCAACTTCCTTCTAGTTTTGCTGCTCGTATAGCTGAGAAATCAAATCGGAATTTGAGACTTGCCGTGTCCAACAAAAAAGTTATAATAATTAAGAATCCTGGAATTGCTGATGGACTTTTCAGAATGCATTTTCATGATTGCTTTATAAGAGGGTGTGATGCATCGGTACTTCTTGATTCTGCTCCCTCAAACACTGCAGAGAAAGACTCTCCCGCCAATAAAAGTCTTAGAGGGTTTGAAGTTATTGATAATGCCAAGGCTAAACTTGAAGATGTATGCAAAGGAACTGTTTCATGTGCTGACATAGTTGCATTTGCAGCAAGGGACAATGTGGAGATAGAGCACACACCATTGGATGCTCTCATTGCACTGCTTTCAGCAGCAGATTATACAACTTCAGCATTCTCTGTGTAG 603 0.3964 MTPSDGGFQDRYIVSIDTKGKKGFKEYYFALVVPIILCYLGSGYLCGRLLKSYSSLPIKKEGLQLPSSFAARIAEKSNRNLRLAVSNKKVIIIKNPGIADGLFRMHFHDCFIRGCDASVLLDSAPSNTAEKDSPANKSLRGFEVIDNAKAKLEDVCKGTVSCADIVAFAARDNVEIEHTPLDALIALLSAADYTTSAFSV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03473 200 ProSiteProfiles Plant heme peroxidase family profile. 64 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 Pfam Peroxidase 93 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 PRINTS Plant peroxidase signature 159 169 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 PRINTS Plant peroxidase signature 140 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 PRINTS Plant peroxidase signature 101 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 SUPERFAMILY Heme-dependent peroxidases 86 180 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 PANTHER PEROXIDASE 25-RELATED 92 178 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 Gene3D - 77 199 - -
Trre1g03473 200 PRINTS Haem peroxidase superfamily signature 99 113 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g03473 200 PRINTS Haem peroxidase superfamily signature 160 177 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03473 Trre-Chr1 31245857 31247115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03473 49 174 Peroxidase AT4G33420 51.145 7.71e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03473 K00430 - mnt:21386166 144.436