Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03468 ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTAGTTGGTAATGAGGTTCCAGTGAGTTTCCAAGCTGCTCCAAGGATTGAAAACAACTTGGATTTTTCCATGGCAACGGTGCCATCACCGGCTACGGTGCCGGCGTTGAAAAAGAAGAGAGGAAGACCAAGGAAGTATGGGCCAGATGGTAAGCCTGCACCAGGGGCTGTGACGGCGCTTTCGCCTATGCCGATTTCTTCCTCGATTCCGTTGACTGGAGAGTTCTCTGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGGACAAGGTGTAAATGTAAATGAGGGAATTGCATACTCAGTTGGTGCCCACTTCACGGCTTATGTGCTTACGGTGAATTCTGGCGAGGATGTTACTATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGCACTTTAACATACGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCGACTGATAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCCGTGCAGGTCGTTGTAGGAAGTTTTCTTCCTACTCACAATTTGGAGAACAAGAGCAAGAAGCCGAGGGTGGAGCATAATATATCAACTATTACGCATAATAATCCTCCTCCGCACCTTAATCATCATATGTCAAATGAAGTAAGTTTTGGCATAGTGAAACCTATTATGACACCTGGTGCATTTCAAGAAGAGAACATCGTCTCTTTCAACAATAATGTTCAAGACTCTAGGAACAACTCATCTGCTGACGACAGAGATCCTTTACCTGAAAAGGACTCTAACCATAGCCAATCAAATGCTTGA 1017 0.4454 MEERENFGAVNAVVGNEVPVSFQAAPRIENNLDFSMATVPSPATVPALKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKSSFKFDFESPPGQGVNVNEGIAYSVGAHFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPTHNLENKSKKPRVEHNISTITHNNPPPHLNHHMSNEVSFGIVKPIMTPGAFQEENIVSFNNNVQDSRNNSSADDRDPLPEKDSNHSQSNA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03468 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 326 IPR039605 GO:0003680
Trre1g03468 338 MobiDBLite consensus disorder prediction 44 67 - -
Trre1g03468 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 249 - -
Trre1g03468 338 ProSiteProfiles PPC domain profile profile. 126 271 IPR005175 -
Trre1g03468 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 246 IPR005175 -
Trre1g03468 338 CDD DUF296 135 246 IPR005175 -
Trre1g03468 338 Gene3D - 133 266 - -
Trre1g03468 338 MobiDBLite consensus disorder prediction 309 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03468 Trre-Chr1 31191082 31195126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03468 49 261 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 64.253 1.66e-83 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03468 - - gmx:100776862 443.351