Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03467 ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTAGTTGGTAATGAGGTTCCAGTGAGTTTCCAAGCTGCTCCAAGGATTGAAAACAACTTGGATTTTTCCATGGCAACGGTGCCATCACCGGCTACGGTGCCGGCGTTGAAAAAGAAGAGAGGAAGACCAAGGAAGTATGGGCCAGATGGTAAGCCTGCACCAGGGGCTGTGACGGCGCTTTCGCCTATGCCGATTTCTTCCTCGATTCCGTTGACTGGAGAGTTCTCTGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGGACAAGGTGTAGGTGTAAATGTAAATGAGGGAATTGCATACTCAGTTGGTGCCCACTTCACGGCTTATGTGCTTACGGTGAATTCTGGCGAGGATGTTACTATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGCACTTTAACATACGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCGACTGATAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCCGTGCAGGTCGTTGTAGGAAGTTTTCTTCCTACTCACAATTTGGAGAACAAGAGCAAGAAGCCGAGGGTGGAGCATAATATATCAACTATTACGCATAATAATCCTCCTCCGCACCTTAATCATCATATGTCAAATGAAGTAAGTTTTGGCATAGTGAAACCTATTATGACACCTGGTGCATTTCAAGAAGAGAACATCGTCTCTTTCAACAATAATGTTCAAGACTCTAGGAACAACTCATCTGCTGACGACAGAGATCCTTTACCTGAAAAGGACTCTAACCATAGCCAATCAAATGCTTGA 1023 0.4457 MEERENFGAVNAVVGNEVPVSFQAAPRIENNLDFSMATVPSPATVPALKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKSSFKFDFESPPGQGVGVNVNEGIAYSVGAHFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPTHNLENKSKKPRVEHNISTITHNNPPPHLNHHMSNEVSFGIVKPIMTPGAFQEENIVSFNNNVQDSRNNSSADDRDPLPEKDSNHSQSNA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03467 340 MobiDBLite consensus disorder prediction 44 67 - -
Trre1g03467 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 251 - -
Trre1g03467 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 248 IPR005175 -
Trre1g03467 340 ProSiteProfiles PPC domain profile profile. 128 273 IPR005175 -
Trre1g03467 340 CDD DUF296 137 248 IPR005175 -
Trre1g03467 340 Gene3D - 135 268 - -
Trre1g03467 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 328 IPR039605 GO:0003680
Trre1g03467 340 MobiDBLite consensus disorder prediction 311 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03467 Trre-Chr1 31191082 31195126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03467 49 263 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.514 2.91e-83 256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01540 11 15003976 15008139 Trre1g03467 1 31191082 31195126 ECH
Trre1g03467 1 31191082 31195126 Trre1g03467 1 31191082 31195126 ECH
Trre11g01540 11 15003976 15008139 Trre1g03467 1 31191082 31195126 PCT