Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03436 ATGGTAGGATTGGAACTCATACCAATAGGTACAATTTTAACTGTGGTAACAAACCAAGTCTTAAGAACAGCTCATGCTGCAGCTGATGTTCTTATTGGTAAAGAGAGTTTCAAGGCACTTTCGAAATATCTATTTGATATTGAACCAGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCACAACCTGCAAGAATTGCTCTTGAGTCCATTGAAGCAGATGTTAAAAGAGCGAATAATTTGGTTGAGAAGTACAAGAACCGTGGCCGTTTTTACTTGCTAGTTAAGTGTCGATCGATAGTTGAGGAAGTTGAACAAGTTACAAGGGATATTGGAAAGTCGCTTGCTGCACTGTCTATTGCAAATACCGAAGTGCTATCGAGAATTTCTGATCAGGTTGATAGACTACAAGATGAGATGCAAAGGGTTGAGTTCGAGGCTTCGCAATCTCAGCTTGAAATTGTTGATAAGTTGAACCAAGGGCTAAGAGATCAGAATCATGATCAGGCTTTCGCGAACGACATGCTTGAGTTAATAGCAAGGGCGGTTGGAGTACCAGTGGAACCGTCCGAGATAGGAAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTGCCAATAACAAAGAAAGGGCCGAATTTTATTTCTTGGAGCAGATCATTAAGTTACTCTCTAGAGCCGATGCAGCAAGGGATTACGAAGAAGTTAAAAATCAATACTTTAAAAGGGTTGAGGTGATAGAGGGATATGATCCAAGGGAAAAATATATCCTACCGCTTAAATCTTTCCTTTGTTGCATAACCGGAGCTGTTATGGTTGATCCTGTTAGCCTCTGCACAGGTACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTATGATGGAAACAGTACAGATCCAGACACAAATGAGGTTCTTGAAGATATTAGTTTGAGGTCTAATATTCCACTAAGACAATCAATCGAAGAGTGGAGAGAACTTAATTATTGTCTTCTGATAAGGTCTATCGGGGAAGATTTGTTGTTAAGTTGTAATCTACAAGAGTCCCTAAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGACTGGATCTCTATCGGAAAGCTTACTGACATTGTTATATCGATCCTCGGGAACTCTAATGACAGAGAAGTGAAGATGAAGATTCTGATCACTTTGAAGGATGCTGTAGAAGGGCATGCAAGAAACAAAGAGAAATTGGCCGAATCTCAAGGATGGGATCATATTATTTCATGCTTAGAAAGTGACTCTAACATTTCAAAGGAAGCAGTTGAATTGCTATATGAGTTGCTTCAAGACAGGTCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACCATAATGCAGTTCTTTTCCTTGTAACCCTTGTAAAGGACCCTGATAACAATTCAGCCGAGGTTGCGCAGAAGATTTTGATGGAGCTTTTTGAAATAAATGAAGACAGTATTATCACCGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGGTTCGAGGACCGGATTCAAGAATATCAATGGCAAAAGCCATAGTAAATTTGGAGTTGGATGATTTAAGCTTGATACAACTTGGCAAGGAAGGAGTTATAGCTCCTTTGATAGAAATGCTGTCTGGAAGTATACGGGGGACTAGTAATGCATCAACCATTATCGAATCGAAAGACCTGTCATTATCAGCTCTTGTTAAATTAGCTGGATCTCATGCTAACAAGGGAATTATTGCTTCCTCTGGTGGTGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGTACAAGGTCATTCATCACAATTAAATGTTCTGAAATCCTCGAGAAACTTTCTTCTTCTGATGATGGGATTGATTTCTTTGTTGATGGAGAAGGGAAACAGCTCGAGTTAGATTCAATCATCACGAAGTTGCTTGTTTTGCAACAGAGTTCCAACTCAGGTCACAACCTTCGTAAGCCCACGCTACGCGCTCTTCTTGGCATCTGCAAGTTCGAGACTAGTTTGGTGAAAAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTCGATGATTCCGACTCAGAAATCCGAGAGACTGCGATAAATCTTCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGGGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTAGAGGCTTTGATTGGATTCCTCGAGAACGACGACAACGATAATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTACCGAAATCAGAACGAGAGCTAACTAATAAGTTGATTGAAATGGGAGGACTTGATGCAATCTTAAGCATTTTAAAAACCGGCAAAATGGAAGCAAAAGAAAACGCTCTCAGCGCACTCTTCAGATTCACAGATCCTACAAATATCGAGTCCCAGCGTGATTTAGTTAAACGCGGAATATATCCTTTGCTTGTAAACTTTCTCAATACAGGTTCAGTCACTGCAAAGGCAATAGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACGCCAAAGCTCACAGTTGTTTCCAAACCAAACGGCTGCTGGTTTTTCCGATCATCGCGCATTCCTTTATGCGCAGCGCACGATAGTGTATGCAATGTGAGCACAACATTTTGTCTGTTGGAAGCAAATGCTTTACCTGGCTTGATAAAACTGTTACACGGAGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTTTTGGAAGAGTTTCCGCATAGGGGTGCTCGTTTGTTGCACGAGTCGAATGCAATGAGACCTTTATTGGAGATTTTGAACTGGGGAAGTGAGTCCCTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAATGACGGCTAGGTCGCGTCTAGTTCATTTGACCGGAACAAATATATATGGAGTTGGTCATCTTAGAAGGAAAGCTGCTAAGGTTTTATCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA 3072 0.4069 MVGLELIPIGTILTVVTNQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARIALESIEADVKRANNLVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVDRLQDEMQRVEFEASQSQLEIVDKLNQGLRDQNHDQAFANDMLELIARAVGVPVEPSEIGKELASIRKEKEEAANNKERAEFYFLEQIIKLLSRADAARDYEEVKNQYFKRVEVIEGYDPREKYILPLKSFLCCITGAVMVDPVSLCTGTTCERSAIEGWFYDGNSTDPDTNEVLEDISLRSNIPLRQSIEEWRELNYCLLIRSIGEDLLLSCNLQESLSQMQALIAENSINKDWISIGKLTDIVISILGNSNDREVKMKILITLKDAVEGHARNKEKLAESQGWDHIISCLESDSNISKEAVELLYELLQDRSGWNQCFCKKLSENHNAVLFLVTLVKDPDNNSAEVAQKILMELFEINEDSIITAANCGWYKPLADRMVRGPDSRISMAKAIVNLELDDLSLIQLGKEGVIAPLIEMLSGSIRGTSNASTIIESKDLSLSALVKLAGSHANKGIIASSGGVPLILDLMFSPRTRSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITKLLVLQQSSNSGHNLRKPTLRALLGICKFETSLVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTNKLIEMGGLDAILSILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKAIAAAFIGDLSMSTPKLTVVSKPNGCWFFRSSRIPLCAAHDSVCNVSTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGMTARSRLVHLTGTNIYGVGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03436 1023 Coils Coil 69 89 - -
Trre1g03436 1023 Gene3D - 516 855 IPR011989 -
Trre1g03436 1023 SUPERFAMILY ARM repeat 368 762 IPR016024 -
Trre1g03436 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Trre1g03436 1023 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Trre1g03436 1023 SMART arm_5 926 966 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 722 764 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 680 720 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 406 445 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 809 849 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 584 626 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 882 922 IPR000225 GO:0005515
Trre1g03436 1023 SMART arm_5 766 806 IPR000225 GO:0005515
Trre1g03436 1023 SUPERFAMILY ARM repeat 645 1008 IPR016024 -
Trre1g03436 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 333 IPR013083 -
Trre1g03436 1023 Coils Coil 127 154 - -
Trre1g03436 1023 CDD MLKL_NTD 34 145 - -
Trre1g03436 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1015 - -
Trre1g03436 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 762 IPR000225 GO:0005515
Trre1g03436 1023 Gene3D - 344 504 IPR011989 -
Trre1g03436 1023 Gene3D - 873 1014 IPR011989 -
Trre1g03436 1023 SUPERFAMILY RING/U-box 256 330 - -
Trre1g03436 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Trre1g03436 1023 Gene3D - 8 123 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03436 Trre-Chr1 30661042 30664575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03436 263 978 U-box Gene Family AT1G76390 26.554 9.13e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03436 - - gmx:100783638 1593.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03436 1 30661042 30664575 Trre1g03436 1 30661042 30664575 ECH