Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03434 ATGAAACCGCCATTACAACAACCAAACCCACGTCCTCCCACCATTCTCGGAAAGTACCAACTAACCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAAGTCTACCAAGCCCGCTCCCTCATCGATGCTTCCACCGTCGCTGTCAAAATTATTGACAAATCTAAAACCGTCGACGCCGCAATGGAGCCACGTATAATCCGCGAAATCGACGCCATGCGCCGTCTCAATAACCACCCTAACATTCTCCAAATCCAGGAAGTCATGGCTACAAAAACTAAGATCCATCTCGTCGTTGAATTCGCCGCCGGTGGTGAACTTTTCACCGCTCTCGCTCGCCGTGGACGGTTATCCGAATCCACAGCTCGTTTCTACTTTCAACAGCTTGTTTCTGCACTTCGTTTCTGCCACAGTAACGGCATCGCTCACCGTGATCTCAAGCCACAGAATCTCCTCCTCGATGCCGATGGTAACCTCAAGGTCTCCGACTTCGGTCTCTCCGCTCTCCCCGAGCATCTAAAAAACGGCCTTCTCCACACAGCATGCGGCACGCCGGCGTACACAGCACCGGAGATTTTCCGTAGGAGTGGCGGTTACGACGGATCTAAAACCGATGCGTGGTCCTGTGGCCTCATACTCTACGTACTTCTCGCCGGTTACCTTCCTTTCAGCGATTCAAATATTCCGGTAATGTGTAAGAAAATTTCCCGGCGAGATTACCAGTTTCCAGATTGGATTTCAAAACGGGCGCGTTTTGTCATATATCGGTTACTTGACCCGAATCCAGAAACCCGAATGAGTTTGGAGGCTCTTTTTACGAACGAGTGGTTTAAAAAATCGTTAAGACCCGAACCCGAACCCAAAAAGAGCGTGTTCGGGTTCGATTACGGAAACCAAGCCAAAATTTCGGGTTTAAACGCCTTTCATTTAATATCTATGTCTTCGGGTTTGAATTTGAGTGGGTTATTTGAAACGGCGTCGTCTGAAGGTGATAATAATAAAAGTATGAATAGGAGGGAAAAGAGGTTTACTTCAAGTGCAAAAATGGAAGTGATGGAGGAAAAGGTGAAAGAAGTGGGAGGGGTTTTTGGGTTTAAGGTTGAGGTTGGGAAAAATAATGCAATTGAGTTGGTGAAAGGGAAAGTGGGTTTAGTAGTTGAGGTGTTTGAGATTGTGCCTTCTCAACTTCTTTTGGTGGATGTTAAGGTGGTAGAGGGTGATTTGGAGTTTGAGAATAATCATTGGGAGGATTGGAAAGTTGCTTTGCAAGATCTTGTGATTTCATGGCACAATGAAGAGTCTTCATGA 1302 0.4724 MKPPLQQPNPRPPTILGKYQLTRLLGRGSFAKVYQARSLIDASTVAVKIIDKSKTVDAAMEPRIIREIDAMRRLNNHPNILQIQEVMATKTKIHLVVEFAAGGELFTALARRGRLSESTARFYFQQLVSALRFCHSNGIAHRDLKPQNLLLDADGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEIFRRSGGYDGSKTDAWSCGLILYVLLAGYLPFSDSNIPVMCKKISRRDYQFPDWISKRARFVIYRLLDPNPETRMSLEALFTNEWFKKSLRPEPEPKKSVFGFDYGNQAKISGLNAFHLISMSSGLNLSGLFETASSEGDNNKSMNRREKRFTSSAKMEVMEEKVKEVGGVFGFKVEVGKNNAIELVKGKVGLVVEVFEIVPSQLLLVDVKVVEGDLEFENNHWEDWKVALQDLVISWHNEESS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03434 433 FunFam Non-specific serine/threonine protein kinase 9 301 - -
Trre1g03434 433 Gene3D Phosphorylase Kinase; domain 1 21 104 - -
Trre1g03434 433 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Trre1g03434 433 CDD CIPK_C 304 421 - -
Trre1g03434 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Trre1g03434 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 400 - -
Trre1g03434 433 Gene3D Transferase(Phosphotransferase) domain 1 105 290 - -
Trre1g03434 433 ProSiteProfiles Protein kinase domain profile. 19 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03434 433 SUPERFAMILY Protein kinase-like (PK-like) 15 291 IPR011009 -
Trre1g03434 433 FunFam Non-specific serine/threonine protein kinase 12 104 - -
Trre1g03434 433 Pfam Protein kinase domain 19 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03434 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Trre1g03434 433 SMART serkin_6 19 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03434 433 Gene3D Kinase associated domain 1, KA1 299 425 - -
Trre1g03434 433 Pfam NAF domain 303 366 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03434 Trre-Chr1 30631802 30633103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03434 4 430 Miscellaneous Gene Families AT3G23000 54.566 8.44e-161 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre1g03434 Pkinase 9.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03434 K12761 - gmx:100784173 609.757