Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03427 ATGGAAAATAGTGTTGCATATGACAAAGATCTTAACATGAAGGATACTGAGTTAAGATTAGGACTTCCAGGAACAGAGAAAAATGAGAAAGAAGAAACAACACTTTCTGCTAAAGTTTCTAACAAAAGACCATTGATTGAATCTTCAAAGGAAAGTGGTTCAAAAACATCTGATGAAGCACCTCCTTCTAAAGCTAAGATAGTTGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGTTTACAAGAGGCTGAGGCTTCTGGGATTTATGTGAAAGTGAGTTTGGATGGTGCTCCTTATCTTAGAAAGATTGATTTAAGGATCTATGGAGGGTATGCACAACTTCTCAAAGCTTTAGAAAACATGTTCAAGTTAAACATAGGTGGCTATTCTGAAAAAGAAGGTTATAAAGGATCTGATTATGAACCTACTTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGATATGTTTGTGACATCTTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGTGTTTGA 546 0.3663 MENSVAYDKDLNMKDTELRLGLPGTEKNEKEETTLSAKVSNKRPLIESSKESGSKTSDEAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLNIGGYSEKEGYKGSDYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03427 181 SUPERFAMILY CAD & PB1 domains 79 174 - -
Trre1g03427 181 ProSiteProfiles PB1 domain profile. 88 175 IPR000270 GO:0005515
Trre1g03427 181 MobiDBLite consensus disorder prediction 16 65 - -
Trre1g03427 181 Pfam AUX/IAA family 50 180 IPR033389 -
Trre1g03427 181 Gene3D - 82 181 - -
Trre1g03427 181 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 178 IPR003311 GO:0005634|GO:0006355
Trre1g03427 181 FunFam Auxin-responsive protein 83 181 - -
Trre1g03427 181 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03427 Trre-Chr1 30530268 30531230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03427 91 179 B3 DNA Binding Superfamily AT4G23980 34.831 1.54e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre1g03427 AUX_IAA 4.2e-50 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03427 K14484 - gmx:100527777 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03427 1 30530268 30531230 Trre1g03427 1 30530268 30531230 ECH