Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03405 ATGAAAATCTACAGGACAGATAATAATTGGAAAACAATACAGGATCATCTTGTCACCTCTGAAGGAAAGATTATGACAGCTGAAAATGTTCCTTCAACTCCATTGGTAACAAAAAAAAGGAAGAACTCTCAATCTTATTCAAAATCCAATGCAAAAAAGGCCAAAACAGCTTCAAAAAATATTAAGAAATATGTAAGAAAAGGGAAGAAGATTCAAGAAAAGCCGAAGCAGCTGCAAGAAGAATTACCTATCACTCCACAAGCACCAAAAGCTCCTGCTTCTGAACTTTCTGTTGCAGAAGATGTTAAGAAAGATGTGAAACAACAAGGTGGAATAGAAATTTTGGATGAAGTTTCTACAATTTTATCTGCTAGAAGAGCAAAAATTGCAGCTAGGAAAAAGTTTATCAGAACTGAATTAACTCCTACTGCTCAACCTGACAAAGTCACAGTTGATGAAAAGAAAGACGATACGCGCCCCCGGCTTGAAACAGTCACTGAAACTCCAAAAATCAGATTTAAGAATTCTTCAAAACCAGACTCATCAAGTCAAAAACTAGTGTTCAAGAATGTTTCCAGGGACAATGCTGAATCATTGAAAGAAAAAGCTGCTATGTGTGAGCCATTGAATTGGTTGGTGGAAACTACAAAGAAAAACAATTCTTGTATTCTAGTGGATTCTAGTGACAATGACTCTCATCATGTGACAAAGTTTGAAGTTAAGAATCATTGTAATAACCACCAAACAGAATTAGAAGATAATCAAAATGATCCAAAATCATCTTCCTTGAAGTTTAAGCTTAAAAGGGTGGAAGAAAAAAGAGTAAAATTTTTTGAGGACTTGAATCTTCCAGCACTACCTGAAAATGAAAGCAAGGAAGATTATGGTTCTTTCTGGTTCTCCTTGGTTGCTTCCAAAGAACAGGAACTTGGTGCACTGCCACAAATATCTTCTCCCTACTTAAGGGTCAAGGATGGAAGTTTACCTGTTTCACATATCAAAAAGTATATTGTAAAGAAGCTTAATCTTGCTAATGAAGCTGAGGTGGAGATTTTATTAGGAGATAAGCCAGTTTTATGTTCAATGCAGTTGCAAAACTTAATGGAAATGTGGTTGGAAACAATGTCAAAGAATGAAAGGGTTGAAACTTCTGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCGTACCGTCGAAAAGCTTGA 1209 0.359 MKIYRTDNNWKTIQDHLVTSEGKIMTAENVPSTPLVTKKRKNSQSYSKSNAKKAKTASKNIKKYVRKGKKIQEKPKQLQEELPITPQAPKAPASELSVAEDVKKDVKQQGGIEILDEVSTILSARRAKIAARKKFIRTELTPTAQPDKVTVDEKKDDTRPRLETVTETPKIRFKNSSKPDSSSQKLVFKNVSRDNAESLKEKAAMCEPLNWLVETTKKNNSCILVDSSDNDSHHVTKFEVKNHCNNHQTELEDNQNDPKSSSLKFKLKRVEEKRVKFFEDLNLPALPENESKEDYGSFWFSLVASKEQELGALPQISSPYLRVKDGSLPVSHIKKYIVKKLNLANEAEVEILLGDKPVLCSMQLQNLMEMWLETMSKNERVETSVGSSAKDFVMVLSYRRKA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03405 402 Gene3D - 260 399 - -
Trre1g03405 402 MobiDBLite consensus disorder prediction 55 70 - -
Trre1g03405 402 MobiDBLite consensus disorder prediction 28 54 - -
Trre1g03405 402 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 119 401 IPR044807 GO:0004842
Trre1g03405 402 MobiDBLite consensus disorder prediction 28 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03405 Trre-Chr1 30226177 30228333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03405 313 401 C3H Transcription Factor Family AT3G23060 46.067 1.16e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03405 K16277 - lja:Lj5g3v1204350.1 191.43