Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03404 ATGGTACGAGAATGGGTGAATAATGCTAAGCTCTTAACATGCTTCACGTGTCCTTTGTGTAACAATATTTTCAGAAATGCCACCTCAATTTCTGAATGCTTAGATATTTTTTGCAGGGAATGTATAGAAAGGAAGCTAATAGATGAGAAATTGAATCACTGTCCAGTATGCAAAGTCGATTTGGGTTGTTCTCCATTAGACAAACTAAAGACAGATAATAATTGGAAAACAATACAGGATCATCTTGTCACCTCTGAAGGAAAGATTATGACAGCTGAAAATGTTCCTTCAACTCCATTGGTAACAAAAAAAAGGAAGAACTCTCAATCTTATTCAAAATCCAATGCAAAAAAGGCCAAAACAGCTTCAAAAAATATTAAGAAATATGTAAGAAAAGGGAAGAAGATTCAAGAAAAGCCGAAGCAGCTGCAAGAAGAATTACCTATCACTCCACAAGCACCAAAAGCTCCTGCTTCTGAACTTTCTGTTGCAGAAGATGTTAAGAAAGATGTGAAACAACAAGGTGGAATAGAAATTTTGGATGAAGTTTCTACAATTTTATCTGCTAGAAGAGCAAAAATTGCAGCTAGGAAAAAGTTTATCAGAACTGAATTAACTCCTACTGCTCAACCTGACAAAGTCACAGTTGATGAAAAGAAAGACGATACGCGCCCCCGGCTTGAAACAGTCACTGAAACTCCAAAAATCAGATTTAAGAATTCTTCAAAACCAGACTCATCAAGTCAAAAACTAGTGTTCAAGAATGTTTCCAGGGACAATGCTGAATCATTGAAAGAAAAAGCTGCTATGTGTGAGCCATTGAATTGGTTGGTGGAAACTACAAAGAAAAACAATTCTTGTATTCTAGTGGATTCTAGTGACAATGACTCTCATCATGTGACAAAGTTTGAAGTTAAGAATCATTGTAATAACCACCAAACAGAATTAGAAGATAATCAAAATGATCCAAAATCATCTTCCTTGAAGTTTAAGCTTAAAAGGGTGGAAGAAAAAAGAGTAAAATTTTTTGAGGACTTGAATCTTCCAGCACTACCTGAAAATGAAAGCAAGGAAGATTATGGTTCTTTCTGGTTCTCCTTGGTTGCTTCCAAAGAACAGGAACTTGGTGCACTGCCACAAATATCTTCTCCCTACTTAAGGGTCAAGGATGGAAGTTTACCTGTTTCACATATCAAAAAGTATATTGTAAAGAAGCTTAATCTTGCTAATGAAGCTGAGGTGGAGATTTTATTAGGAGATAAGCCAGTTTTATGTTCAATGCAGTTGCAAAACTTAATGGAAATGTGGTTGGAAACAATGTCAAAGAATGAAAGGGTTGAAACTTCTGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCGTACCGTCGAAAAGCTTGA 1404 0.3597 MVREWVNNAKLLTCFTCPLCNNIFRNATSISECLDIFCRECIERKLIDEKLNHCPVCKVDLGCSPLDKLKTDNNWKTIQDHLVTSEGKIMTAENVPSTPLVTKKRKNSQSYSKSNAKKAKTASKNIKKYVRKGKKIQEKPKQLQEELPITPQAPKAPASELSVAEDVKKDVKQQGGIEILDEVSTILSARRAKIAARKKFIRTELTPTAQPDKVTVDEKKDDTRPRLETVTETPKIRFKNSSKPDSSSQKLVFKNVSRDNAESLKEKAAMCEPLNWLVETTKKNNSCILVDSSDNDSHHVTKFEVKNHCNNHQTELEDNQNDPKSSSLKFKLKRVEEKRVKFFEDLNLPALPENESKEDYGSFWFSLVASKEQELGALPQISSPYLRVKDGSLPVSHIKKYIVKKLNLANEAEVEILLGDKPVLCSMQLQNLMEMWLETMSKNERVETSVGSSAKDFVMVLSYRRKA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03404 467 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 185 466 IPR044807 GO:0004842
Trre1g03404 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 95 IPR013083 -
Trre1g03404 467 MobiDBLite consensus disorder prediction 120 135 - -
Trre1g03404 467 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Trre1g03404 467 Gene3D - 327 464 - -
Trre1g03404 467 MobiDBLite consensus disorder prediction 94 119 - -
Trre1g03404 467 SUPERFAMILY RING/U-box 13 66 - -
Trre1g03404 467 MobiDBLite consensus disorder prediction 94 161 - -
Trre1g03404 467 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03404 Trre-Chr1 30226177 30229587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03404 258 389 C3H Transcription Factor Family AT2G30580 34.752 2.70e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03404 K16277 - qsu:112004742 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03404 1 30226177 30229587 Trre1g03404 1 30226177 30229587 ECH