Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03395 ATGAAGAAATTGTGGCTTTCTTTTTCTCATTTATTTCCTACACTCATTTTTCTTTTGCTTATTCCAACTTCAATTGCACAATTAACACAAACTGAAACTAGAATTATTTTACAAGTTCAGAAGCTTCTAGAATATCCACAAGTTCTTCAAGGATGGAACAATTGGACAAACTTCTGCTTCCTTCCGCCGTCCACTTCGGTCAAAATAGTTTGTTCGAACGGTCACATAACCGAATTAACTGTCATTGGAAACAGAACTTCTCCGTCTTCGCATAGTTCTAAACCTTTTCAAGCACTTTCCGGAACTTTCTCAACTGATTCATTTTTCACTGTTATGACAAAGCTTTCAAATTTGAAGGTTTTATCATTAGTTTCATTAGGATTATGGGGTCCATTACCGGAAAAAATCAACCGGTTTTCATCTCTCGAAGTATTGAACGTTAGTTCGAATTTCATTTCCGGTGAAATTCCGACTTCCATATCTTCAATGAAAAATTTGAAGAGTATTGTTTTGGCTGATAATCTTTTCATTGGAAATATTCCAGATCTCAAAAGTTTAACTTCGCTTGAAGAGGTTAATTTTGATGGTAACAAATTAGGTCCTCAATTTCCTTCACTAGGAAAAAATCTTGTGAAAATTATCTTGAGTAAAAATTCTATAAGATCTCAAATTCCTCCTCAATTTATTACACACTTTGATAAGCTTCAAATATTTGATATTTCTTCAAATAATTTTGTTGGAAAAATTCCATTTTCTATGTTTTCTTTACCTTCACTAAATTACCTAGATTTGTCTTCAAACAAATTTAGTGGAAATCTTTCAATGAATTTACCTTGTAGTTCATCATTGAATTATGTTGATATTTCACATAATTTTCTAGTAGGAAAATTACCACCATGCATCATTAAATCAAAGGCTAAAGTATTGTATAATTGGAATTGTTTATCAACAAAAAAGTTGAATGATCAACAACATGGTATTTCATATTGCAAAAAAGATGCAGCTTTAGCAGTTAAGCCTCTTAAAACAAAGGTGAAGAAGGAATCAAGTATGAAATTGGGTCTTGTGCTTGTTATTGTTGGAGGTGTTGTTGGAATTGCATGTGTTTTGATTCTGCTTATTGTGTTCATCTTGTGGAAATCCAAACCTGAAAGATTGAATCATAATATGGATAGATCTGCTGCTCATAAGTTTTCAGATAAATCAAATTTGAATGCAAGACATGTTCCTCAAACAATGAGGCAAGCTACACATGGACAACCACCATACAATGTTTTCACAGAAGAAGAAATTGAAGATGCAACAAATAACTTTGACCAATCAAATCTAATAGGAGAAGGGTCACAAGGACAGATATATAAAGGTTGGTTAAGAGATGGTTCAGTGGTCCTGATTAATTGCATAAAAATAAAGCAAAAGGGTTTACCTCACAGCATTATGCAACACTTAGATGTATTACCAAATTTGAGGCATAGGCATATGGTGAGTGTTTTAGGACATTGTATTATTACTCATCAGGATCCTCCTCAAGTAACAAGCACAGTCTTTATTGTACTTGAATACATTTCAAATGTCACATTGAGGGATCAACTCACAGATGGGAAAAAGAAGGAAATACTGAAATGGCCACAAAGAATGGCAATAAGCATTGGGATTGCAAGAGGAGTTCAGTTCTTACACACAGGAGTTGCTCCTGGAATATTTGGCAACAATTTAAAGATTGATAATATTTTGTTGGATGATAGTCTTAATGCTAAAGTCAGTGGATACAGAATTCCTTTACCATCCAAGAGCACGGTTAATGAACAAAGTGCCACCAATCAAATTGCCAGCACAAGTAATGCAGAAAAAGAAGATATTTATCAGCTTGGTGTTATTCTACTTGAAGTCATTACTGGTACACAAATTACATCCTCTAGTGATGTAGAGCAACTCAAAGATGAGCTGGAAAGAGGTTCATCAGAAGCACCATCAACAATACTAAGAAGTGCAATTGATCCATCATTGAGAGGAAGTTATGCATATGAATCAATGAGTACTGCAGTTCAAATTACCATCAATTGTCTCTCTAAGGTATCTAGTACACGTCCTTCCATAGAGGATGTTCTTTGGAATTTACAATATTCAATGCAAGTTCAAGAGAATTGGACTAGCAGTGGGAACCTCAGCACAAAATTCTAA 2181 0.3407 MKKLWLSFSHLFPTLIFLLLIPTSIAQLTQTETRIILQVQKLLEYPQVLQGWNNWTNFCFLPPSTSVKIVCSNGHITELTVIGNRTSPSSHSSKPFQALSGTFSTDSFFTVMTKLSNLKVLSLVSLGLWGPLPEKINRFSSLEVLNVSSNFISGEIPTSISSMKNLKSIVLADNLFIGNIPDLKSLTSLEEVNFDGNKLGPQFPSLGKNLVKIILSKNSIRSQIPPQFITHFDKLQIFDISSNNFVGKIPFSMFSLPSLNYLDLSSNKFSGNLSMNLPCSSSLNYVDISHNFLVGKLPPCIIKSKAKVLYNWNCLSTKKLNDQQHGISYCKKDAALAVKPLKTKVKKESSMKLGLVLVIVGGVVGIACVLILLIVFILWKSKPERLNHNMDRSAAHKFSDKSNLNARHVPQTMRQATHGQPPYNVFTEEEIEDATNNFDQSNLIGEGSQGQIYKGWLRDGSVVLINCIKIKQKGLPHSIMQHLDVLPNLRHRHMVSVLGHCIITHQDPPQVTSTVFIVLEYISNVTLRDQLTDGKKKEILKWPQRMAISIGIARGVQFLHTGVAPGIFGNNLKIDNILLDDSLNAKVSGYRIPLPSKSTVNEQSATNQIASTSNAEKEDIYQLGVILLEVITGTQITSSSDVEQLKDELERGSSEAPSTILRSAIDPSLRGSYAYESMSTAVQITINCLSKVSSTRPSIEDVLWNLQYSMQVQENWTSSGNLSTKF 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03395 726 Pfam Leucine rich repeat 209 269 IPR001611 GO:0005515
Trre1g03395 726 Pfam Protein kinase domain 439 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03395 726 Gene3D Ribonuclease Inhibitor 205 332 IPR032675 -
Trre1g03395 726 SUPERFAMILY Protein kinase-like (PK-like) 417 706 IPR011009 -
Trre1g03395 726 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 209 707 - -
Trre1g03395 726 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 411 511 - -
Trre1g03395 726 SUPERFAMILY L domain-like 99 302 - -
Trre1g03395 726 Gene3D Transferase(Phosphotransferase) domain 1 522 721 - -
Trre1g03395 726 ProSiteProfiles Protein kinase domain profile. 438 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03395 726 Gene3D Ribonuclease Inhibitor 28 204 IPR032675 -
Trre1g03395 726 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 29 208 - -
Trre1g03395 726 Gene3D Phosphorylase Kinase; domain 1 398 511 - -
Trre1g03395 726 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 522 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03395 Trre-Chr1 30153576 30159113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03395 24 646 Miscellaneous Gene Families AT2G02780 47.773 5.97e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre1g03395 Pkinase 5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03395 - - cam:101490224 1114.75