Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03388 ATGGATGCAACCCCTGTTTTAGAGTTTAATGGAAATGTTCTAGAAAAAGTCAACAATAATACTAGTGAGGACATTGAGGTTGAAACAAATGAAGAAATAATTTTAAAGGATGTTGGACAACAAGATCCAAATGTCATTGTGGTGGAAAATAATGAAGAAATAAATTCAGAGAATGCTGCACAACAAGATCCAAATGTTATTGAGCATCATAAAAAGAATCCTCATATTGGGTTGGAATTTGAATCTCTTGAAGATGTTAAAAATTTCTACAAAGCATTTGCCAAAGAAGAAGGATTTGGTGTTCGTACACGTTCCAGTAAACCAAATTTATGCATACTTGTGTGCTCTAATGTTGGTCAGCGTACAACTGATAATAACAAAAATGGGGAAAGTAACACACTTAAAAGATATAGGAGAAGGTGCTCTAGTTCAAGAACTAATTGTATGGCTTCACTTACCGCTTCAAAGGCACGAAAGAGACACAGGTGGGCTATCATTGGCTTTAACAATGTCCATAACCATGGTATGGTTAGCCCAAAGAGTGTGAACTATCTTAGATGTCATAAGAAAATGAGCACAGCAGCAAAAAGCCTTGTTGAAACGTTTGATAAAGAGGGTTTGCCTACCGGAAAAGTTGATGCAATGTTTAACAATGGAGGTTCAACCTTCTCTAATAGAGATTGTTGGAATCATCTTAGAGATCTTCGATCTAGAAATTTAGATGTTGGAGATGCCCAGGCTGTGTTCAACTTTTGCATACAAAAGCAAACTGAGAATCCAAATTTCTTTTATGCAATACAGTGTGATAATGATTCTCGAATGATTAACTTTTTTTGGGTAGATGCGAGATCAAGGTTAGCCTATAAAATATTTGGAGATGTTGTTACATTTGATACAACATATAAGACCAACAAATATAGTATGCCCTTTGCACCTTTTACCGGGTTGAATCACCATCATCAGTCTATTCTATTTGGTTGTGCTTTGTTGCAAGATGAAACAGAGAAATCATTTACATGGTTGTTTGAAAATTGGCTTAAAGCAATGGGTGGTAAGAGTCCTGTGTCAATAATTACTGATCAAGATTTGGCAATGAGAGCTGCAATATCCAAGGTATTTCCACAAACTCGACATCGTTTATGTTTATGGCATATTAGGAAAAAATTTCCTGAAAAGCTTTCACACGTTTACTGTAACAGCCCATTTTTTTCAAAGGCCAAAAAGGCAATATTTTTTTTTTCTTTTTCAACTAACACTCAGAGTGCGCATAGAATATTTTTCAATGAGCCGGCATTCAAATATACAAAGAACTCATTACCATAA 1323 0.3522 MDATPVLEFNGNVLEKVNNNTSEDIEVETNEEIILKDVGQQDPNVIVVENNEEINSENAAQQDPNVIEHHKKNPHIGLEFESLEDVKNFYKAFAKEEGFGVRTRSSKPNLCILVCSNVGQRTTDNNKNGESNTLKRYRRRCSSSRTNCMASLTASKARKRHRWAIIGFNNVHNHGMVSPKSVNYLRCHKKMSTAAKSLVETFDKEGLPTGKVDAMFNNGGSTFSNRDCWNHLRDLRSRNLDVGDAQAVFNFCIQKQTENPNFFYAIQCDNDSRMINFFWVDARSRLAYKIFGDVVTFDTTYKTNKYSMPFAPFTGLNHHHQSILFGCALLQDETEKSFTWLFENWLKAMGGKSPVSIITDQDLAMRAAISKVFPQTRHRLCLWHIRKKFPEKLSHVYCNSPFFSKAKKAIFFFSFSTNTQSAHRIFFNEPAFKYTKNSLP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03388 440 Pfam FAR1 DNA-binding domain 88 177 IPR004330 -
Trre1g03388 440 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 402 IPR031052 GO:0006355
Trre1g03388 440 Pfam MULE transposase domain 294 388 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03388 Trre-Chr1 30073844 30075262 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre1g03388 MULE 4.3e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03388 - - tpra:123895864 486.493