Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03386 ATGATGATCATGAACAACACTTCTAGTGTTTCTTCTTCACCTCATTTTCATCATCAACAACAACGTTCTGTTCTTCAAAATGACAACAACAAAAACCCTACAAATAACGTTGATCAACCAAACAACATCTTGAAAAACAACTTTGTTCTTCAACAACCAAAAACAAACAACAATCAGACACAAGGCCGTATCTTGAAAATCACTTTTTTTATGTCTTCTGCTCGTAATGATAACAATAATAATGTTGTTGTTGTTGATGATGATCATGGTGCAAAACAACAGAACATGAAATCTTTATCATGTAATGTTTGCAACAAACATCTTTCATCAAACAAAGCTTTGAAAGGACATATGAGATCGCATACTCAAAAGGGTTTCAAAAAGTGTACTACTACTGCATCATCATCATCTTCTTTGTTGTTGGAATTGGAACAGAACAAGAAGAGGAATCGTCATGATCAAGATTATGATCAGTTACCACCGGCTATTGACTTGTCAAATTATTTGCCTCCAAGAACATACAAGACCAATAAACGGCGCAACAGATTTTTTAATGATGACGATGCTCGTAATGCTGCTCAAGCATTGTTGGATATGTCTCGTGGAAAGTTTCTGAATTTCGCTGATGATAATGATGATGCGAATAACCGTGACTGTAAAAGGATCAAGCTTTCCAATGAATAA 684 0.3494 MMIMNNTSSVSSSPHFHHQQQRSVLQNDNNKNPTNNVDQPNNILKNNFVLQQPKTNNNQTQGRILKITFFMSSARNDNNNNVVVVDDDHGAKQQNMKSLSCNVCNKHLSSNKALKGHMRSHTQKGFKKCTTTASSSSSLLLELEQNKKRNRHDQDYDQLPPAIDLSNYLPPRTYKTNKRRNRFFNDDDARNAAQALLDMSRGKFLNFADDNDDANNRDCKRIKLSNE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03386 227 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Trre1g03386 227 MobiDBLite consensus disorder prediction 1 42 - -
Trre1g03386 227 Gene3D Classic Zinc Finger 72 158 - -
Trre1g03386 227 SMART c2h2final6 99 121 IPR013087 -
Trre1g03386 227 MobiDBLite consensus disorder prediction 149 174 - -
Trre1g03386 227 SUPERFAMILY beta-beta-alpha zinc fingers 97 129 IPR036236 -
Trre1g03386 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03386 Trre-Chr1 30064325 30065008 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g03386 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03386 - K09228 cam:101497742 74.3294