Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03379 ATGGGACAAGGGCAATCGAAAAGCGAATTGCTCTACCAGCAAGTCAGTTATGGGAATTCCGATGGAATCAAAACTCTTCACAGAGAAGGTGCAGGTCTTGAGTGGATTGACAGAGAAGGAAAAACTCCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTACAATGTTGCTAAAACTTTGATTGAACTTGGAGCAAATGTCAATGCTTATCGTCCCGGTCGTCATGCTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCCGGGCTAAAGGAAACAGCAATGTTGTTCGTGCAATTGAGAGTCATATATGCCTGTTCTCTGGTTGGTTGCGGGAGTTTCATGGACCTGGCTTTCTAGAAGTAGTAGCTCCTAATTTGGTATCGAGAAAAGTTTGGGTGGTAGTTTTACCAGTAGGCTCCCGTGTTCTCACCAGACCTTACAAGTTGGAGCTTGCCGTATATTATACTTTGCAGGATGCACGGCCACGTACAATTGTTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGCCAATCTGAACCGTCAGTGGCAATTAGTGATAAGACTACCAAAACACGCCTTAAATTTGGGCCTGCGAGTGAGAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAATCCAGCATTTTTGCACAATAATGTGCCTACAGTTCCACCAACAGCACCCCCTGCTGCTGAAGACCCAGAATTGGCTATGGCTATCCAGGCATCTATTCAGCATGCCATGCAGGAGAGGCCAAGTTTTCCTGATGCCCAGCCAAACTCTCAAGCAAGCTCTTCCATAAGTGGAGTGAATGAAGTGCAAGGTTTTCTTGGTACACCAAATCCAAATCCAAATGCTAACGAGTCTGTACCTGAAGCTGTTCCAGATGTCCAGAACGATGGCAATGTCTCTGCTGGACATATTGTCAGTGGTCTGGATTTAAATCCATCAGCTCCTCCACTTGCTGATGATGTTCCATTAGATGGCCCGATTCATTATCCTTCAATTGATTTGAGCCCTGTTAATGTATCATCTTCAGTAGTTGAGAAGCCGTCTAACGAAGATGGAAAAACTGCTGATGGAAGTGGCTCAACATGTGTTATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTTAAAACAAAGAAATGGGGTTGCCCTGTTTGTCGATCTAAGATAGACCAGATCATAAAGCTATATCACGTTTGA 1374 0.4447 MGQGQSKSELLYQQVSYGNSDGIKTLHREGAGLEWIDREGKTPLIVACMNPELYNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLILNDDCQTALEVARAKGNSNVVRAIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWVVVLPVGSRVLTRPYKLELAVYYTLQDARPRTIVALWKANLEEPKLRQSEPSVAISDKTTKTRLKFGPASENDRQQLTWFSNACKGIPQVNPAFLHNNVPTVPPTAPPAAEDPELAMAIQASIQHAMQERPSFPDAQPNSQASSSISGVNEVQGFLGTPNPNPNANESVPEAVPDVQNDGNVSAGHIVSGLDLNPSAPPLADDVPLDGPIHYPSIDLSPVNVSSSVVEKPSNEDGKTADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRSKIDQIIKLYHV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03379 457 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Trre1g03379 457 CDD RING-HC_XBAT35-like 402 455 - -
Trre1g03379 457 SMART ring_2 406 444 IPR001841 -
Trre1g03379 457 Gene3D - 3 144 IPR036770 -
Trre1g03379 457 SMART ANK_2a 39 69 IPR002110 GO:0005515
Trre1g03379 457 SMART ANK_2a 75 104 IPR002110 GO:0005515
Trre1g03379 457 SUPERFAMILY RING/U-box 405 451 - -
Trre1g03379 457 Pfam Zinc finger, C3HC4 type (RING finger) 404 451 - -
Trre1g03379 457 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Trre1g03379 457 MobiDBLite consensus disorder prediction 294 328 - -
Trre1g03379 457 ProSiteProfiles Zinc finger RING-type profile. 406 445 IPR001841 -
Trre1g03379 457 PANTHER ROLLING PEBBLES, ISOFORM B 398 454 - -
Trre1g03379 457 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Trre1g03379 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 456 IPR013083 -
Trre1g03379 457 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Trre1g03379 457 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Trre1g03379 457 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Trre1g03379 457 MobiDBLite consensus disorder prediction 286 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03379 Trre-Chr1 30018071 30026227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03379 396 454 C3H Transcription Factor Family AT3G06140 33.898 9.21e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03379 - - gmx:100805974 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g03379 1 30018071 30026227 Trre1g03379 1 30018071 30026227 ECH