Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03374 ATGCACTCTTCAAAACACAAGGAAACTTCAGGCATTGCAAAAGAAAGGTCAAAACCCCCAACAAATGAAGAAGGTCCTTCAAATGTCACCAAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAACCATTACAAGAAGCAGATGAAGGACCTGCAGGAGAGAAAAGAACGGCGTGATATGCTAGAAAAAAAGTTGGCTGATTCTGAAGTCTCTGAGGAAGAGCAGAGCAACGTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGACTTCAGAGGCATAAGATGGGGGCGGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGGCTCTGCCGAGAGAAGGCTACTGGTCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGGTTCGCCGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAACCTACTTGCAGAAGTTGACAGCAATTACATTGTAAAGCTTTACTGTTCCTTTCAAGACCAGGATTATTTATATCTTATAATGGAGTATCTTCCTGGTGGCGATATGATGACATTGCTCATGCGGAAGGATATACTGTCAGAATATGAGGCCAAGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCGATTCATAAACATAATTATGTTCACAGAGATATCAAGCCTGATAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGACTATGTAAACCATTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAATCAGCAGAAGCGGAGTCCTTCAGAGCAACGGACAACCTGTGGCTCCTAAAAGGACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTAGGAACACCTGACTATATTGCCCCTGAAGTTCTACTGAAAAAAGGATATGGCCTGGAATGTGATTGGTGGTCTTTGGGAGCTATAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGCTAAACTATCTTTTGAAGCAAAGGATCTTATTAGTAGACTCCTGTGTAATGTGGAAATGAGGATTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGCGTTGAATGGGATAAATTGTACGAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAATTTGATGAGGTGGACAACCAATCTCAGCCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCCAAGGATGTTAACTTTGTTGGCTACACATATAAGAACTATGAAATCGTGAATGATGATCATCTACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAACGGCCATCTATTAAGACCCTATTTGATGATGATTCGGCTACAACTGCCAATCAACCTGTCGAAGGGAGCTACTCAACAGGAAGTTCCCGACAAGAGTGA 1569 0.4117 MHSSKHKETSGIAKERSKPPTNEEGPSNVTKQKVEAAKQYIENHYKKQMKDLQERKERRDMLEKKLADSEVSEEEQSNVLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRLCREKATGHVYAMKKLKKSEMVRRGQVEHVKAERNLLAEVDSNYIVKLYCSFQDQDYLYLIMEYLPGGDMMTLLMRKDILSEYEAKFYVGETVLAIESIHKHNYVHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSTGISRSGVLQSNGQPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGLECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEAKLSFEAKDLISRLLCNVEMRIGTKGADEIKAHPWFKGVEWDKLYEMKAAFIPEVNDELDTQNFEKFDEVDNQSQPSSKSGPWRKMLSSKDVNFVGYTYKNYEIVNDDHLPGIAELKKKSTKPKRPSIKTLFDDDSATTANQPVEGSYSTGSSRQE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03374 522 SMART serkin_6 103 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03374 522 FunFam Non-specific serine/threonine protein kinase 301 420 - -
Trre1g03374 522 SUPERFAMILY Protein kinase-like (PK-like) 78 455 IPR011009 -
Trre1g03374 522 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Trre1g03374 522 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g03374 522 Gene3D Phosphorylase Kinase; domain 1 101 431 - -
Trre1g03374 522 MobiDBLite consensus disorder prediction 37 69 - -
Trre1g03374 522 Gene3D Transferase(Phosphotransferase) domain 1 187 420 - -
Trre1g03374 522 Coils Coil 45 72 - -
Trre1g03374 522 SMART pkinase_C_6 403 467 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g03374 522 MobiDBLite consensus disorder prediction 498 522 - -
Trre1g03374 522 MobiDBLite consensus disorder prediction 1 69 - -
Trre1g03374 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Trre1g03374 522 ProSiteProfiles AGC-kinase C-terminal domain profile. 403 475 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g03374 522 MobiDBLite consensus disorder prediction 482 497 - -
Trre1g03374 522 Pfam Protein kinase C terminal domain 421 465 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre1g03374 522 FunFam Non-specific serine/threonine protein kinase 187 254 - -
Trre1g03374 522 MobiDBLite consensus disorder prediction 482 522 - -
Trre1g03374 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 454 - -
Trre1g03374 522 ProSiteProfiles Protein kinase domain profile. 103 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03374 522 CDD MobB_NDR_LATS-like 37 98 - -
Trre1g03374 522 FunFam Non-specific serine/threonine protein kinase 74 186 - -
Trre1g03374 522 CDD STKc_NDR_like 101 466 - -
Trre1g03374 522 Pfam Protein kinase domain 105 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03374 Trre-Chr1 29949575 29955736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03374 8 514 AGC Kinase Gene Family AT3G23310 81.445 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre1g03374 Pkinase 1.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03374 K08790 - gmx:100783095 956.436