Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03373 ATGGATAGTTGCTGGTTTAATAAGTTCAAGTCAAAGGACAAAATGCACTCTTCAAAACACAAGGAAACTTCAGGCATTGCAAAAGAAAGGTCAAAACCCCCAACAAATGAAGAAGGTCCTTCAAATGTCACCAAACAGAAGGTTGAAGCTGCAAAGCAGTACATAGAAAACCATTACAAGAAGCAGATGAAGGACCTGCAGGAGAGAAAAGAACGGCGTGATATGCTAGAAAAAAAGTTGGCTGATTCTGAAGTCTCTGAGGAAGAGCAGAGCAACGTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGACTTCAGAGGCATAAGATGGGGGCGGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGGTCAGGCTCTGCCGAGAGAAGGCTACTGGTCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGGTTCGCCGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAACCTACTTGCAGAAGTTGACAGCAATTACATTGTAAAGCTTTACTGTTCCTTTCAAGACCAGGATTATTTATATCTTATAATGGAGTATCTTCCTGGTGGCGATATGATGACATTGCTCATGCGGAAGGATATACTGTCAGAATATGAGGCCAAGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCGATTCATAAACATAATTATGTTCACAGAGATATCAAGCCTGATAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGACTATGTAAACCATTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACTGGAATCAGCAGAAGCGGAGTCCTTCAGAGCAACGGACAACCTGTGGCTCCTAAAAGGACTCAGCAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTAGGAACACCTGACTATATTGCCCCTGAAGTTCTACTGAAAAAAGGATATGGCCTGGAATGTGATTGGTGGTCTTTGGGAGCTATAATGTATGAAATGCTAGTGGGATATCCACCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAAATTATTTAAAATTTCCAGAAGAAGCTAAACTATCTTTTGAAGCAAAGGATCTTATTAGTAGACTCCTGTGTAATGTGGAAATGAGGATTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGCGTTGAATGGGATAAATTGTACGAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAATTTGATGAGGTGGACAACCAATCTCAGCCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCCAAGGATGTTAACTTTGTTGGCTACACATATAAGAACTATGAAATCGTGAATGATGATCATCTACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAACGGCCATCTATTAAGACCCTATTTGATGATGATTCGGCTACAACTGCCAATCAACCTGTCGAAGGGAGCTACTCAACAGGAAGTTCCCGACAAGAGTGA 1611 0.4097 MDSCWFNKFKSKDKMHSSKHKETSGIAKERSKPPTNEEGPSNVTKQKVEAAKQYIENHYKKQMKDLQERKERRDMLEKKLADSEVSEEEQSNVLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRLCREKATGHVYAMKKLKKSEMVRRGQVEHVKAERNLLAEVDSNYIVKLYCSFQDQDYLYLIMEYLPGGDMMTLLMRKDILSEYEAKFYVGETVLAIESIHKHNYVHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSTGISRSGVLQSNGQPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGLECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRNYLKFPEEAKLSFEAKDLISRLLCNVEMRIGTKGADEIKAHPWFKGVEWDKLYEMKAAFIPEVNDELDTQNFEKFDEVDNQSQPSSKSGPWRKMLSSKDVNFVGYTYKNYEIVNDDHLPGIAELKKKSTKPKRPSIKTLFDDDSATTANQPVEGSYSTGSSRQE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03373 536 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g03373 536 SUPERFAMILY Protein kinase-like (PK-like) 92 469 IPR011009 -
Trre1g03373 536 Gene3D Transferase(Phosphotransferase) domain 1 201 434 - -
Trre1g03373 536 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03373 536 MobiDBLite consensus disorder prediction 1 83 - -
Trre1g03373 536 CDD MobB_NDR_LATS-like 51 112 - -
Trre1g03373 536 MobiDBLite consensus disorder prediction 496 511 - -
Trre1g03373 536 FunFam Non-specific serine/threonine protein kinase 201 268 - -
Trre1g03373 536 MobiDBLite consensus disorder prediction 496 536 - -
Trre1g03373 536 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Trre1g03373 536 FunFam Non-specific serine/threonine protein kinase 88 200 - -
Trre1g03373 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 468 - -
Trre1g03373 536 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Trre1g03373 536 Gene3D Phosphorylase Kinase; domain 1 115 445 - -
Trre1g03373 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Trre1g03373 536 MobiDBLite consensus disorder prediction 512 536 - -
Trre1g03373 536 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre1g03373 536 CDD STKc_NDR_like 115 480 - -
Trre1g03373 536 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Trre1g03373 536 MobiDBLite consensus disorder prediction 51 83 - -
Trre1g03373 536 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03373 536 Coils Coil 59 86 - -
Trre1g03373 536 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03373 536 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03373 Trre-Chr1 29949575 29955778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03373 22 528 AGC Kinase Gene Family AT3G23310 81.445 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre1g03373 Pkinase 1.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03373 K08790 - gmx:100783095 976.852