Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03372 ATGGATCATATTATTGGTGGAAAATTCAAGCTTGGGAGGAAAATTGGGGGTGGTTCATTTGGAGAACTTTACTTGGCTGTTAATGTACAAACTGGAGAGGAAGTTGCTATCAAGCTTGAACCTGTGAAGACCAAGCATCCTCAGCTTCACTATGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACGGGTATTCCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATTGCATGGCAATTGACCTTCTTGGACCAAGTCTTGAAGACCTGTTTAACTATTGCAATAGGAAATTCTCTCTGAAAACAGTTCTGATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCCCGGGGTTTCCTGCACCGTGATATAAAGCCTGACAACTTTTTAATGGGATTAGGCCGCAAAGCAAATCAGATTATGATCAAAGCTCTTCCATTCAAATTAGTGGATTTGATGGAAACTTTAATGTTGCTGTAA 495 0.4061 MDHIIGGKFKLGRKIGGGSFGELYLAVNVQTGEEVAIKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNCMAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQIMIKALPFKLVDLMETLMLL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03372 164 PANTHER CASEIN KINASE-RELATED 13 147 - -
Trre1g03372 164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre1g03372 164 Gene3D Transferase(Phosphotransferase) domain 1 86 158 - -
Trre1g03372 164 FunFam Putative Casein kinase I 1 85 - -
Trre1g03372 164 SUPERFAMILY Protein kinase-like (PK-like) 4 148 IPR011009 -
Trre1g03372 164 Pfam Protein kinase domain 10 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03372 164 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Trre1g03372 164 SMART serkin_6 9 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g03372 164 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre1g03372 164 ProSiteProfiles Protein kinase domain profile. 9 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03372 Trre-Chr1 29935925 29937784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g03372 7 160 CBL-interacting serine-threonine protein kinases AT4G24400 30.061 3.15e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre1g03372 Pkinase 8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03372 K08960 - ini:109175645 292.352