Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g03371 ATGGCTAGCAATAATCATAGCAATAATCTTATTGCATGCACAATATGTAGCCAAGTTTTTACAAACACTCAATCACTCATAACTCATTTGGAGTCTCATAGGCTTCAAGAAAACCTTGCTTTATTAAGGCTTAACAACATTAACAACCCTCGCTTTCAGGCTCAGTTTGAACAATTTCCCAACCCTCTCCAAGCACCACCGCAACAACCATTGGCAATACCTCAACCAAGAACAAACCAAATTATGGACGATGTTTCACATCAACTCCATATTTTACAAAATGTTATACCATCTGCTGAGACAAATGTTGCAGAAATGACATTAATGTCACCAACACGCCAACATTATATGGAAGTTTCTCAAATTGATGGAACTAAACCATATATTGACAAGCTAGATAAACCAATCAATAGCATGTTTGTCAATCCTCCTCCTATTGTCAATGATGACACATTGGATTTGGAATTAAAGCTCTGA 477 0.3669 MASNNHSNNLIACTICSQVFTNTQSLITHLESHRLQENLALLRLNNINNPRFQAQFEQFPNPLQAPPQQPLAIPQPRTNQIMDDVSHQLHILQNVIPSAETNVAEMTLMSPTRQHYMEVSQIDGTKPYIDKLDKPINSMFVNPPPIVNDDTLDLELKL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g03371 158 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Trre1g03371 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g03371 Trre-Chr1 29928441 29928917 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g03371 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g03371 - K09228 pvu:PHAVU_007G108100g 75.0997